BioC 3.5: CHECK report for Mirsynergy on malbec2
This page was generated on 2017-08-16 13:15:30 -0400 (Wed, 16 Aug 2017).
Mirsynergy 1.12.0 Yue Li
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/Mirsynergy | Last Changed Rev: 129126 / Revision: 131943 | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | |
tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
Summary
Package: Mirsynergy |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings Mirsynergy_1.12.0.tar.gz |
StartedAt: 2017-08-16 00:41:50 -0400 (Wed, 16 Aug 2017) |
EndedAt: 2017-08-16 00:42:49 -0400 (Wed, 16 Aug 2017) |
EllapsedTime: 58.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Mirsynergy.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings Mirsynergy_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/Mirsynergy.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Mirsynergy/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Mirsynergy’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Mirsynergy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Mirsynergy.Rcheck/00install.out:
* installing *source* package ‘Mirsynergy’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Mirsynergy)
Mirsynergy.Rcheck/Mirsynergy-Ex.timings:
name | user | system | elapsed
|
mirsynergy | 0.312 | 0.020 | 0.423 |
|
plot_module_summary | 1.948 | 0.024 | 1.975 |
|
plot_modules | 0.352 | 0.000 | 0.353 |
|
print_modules2 | 0.012 | 0.000 | 0.011 |
|
summary_modules | 0.004 | 0.000 | 0.007 |
|
tabular_module | 0.056 | 0.000 | 0.053 |
|
tcga_brca_testdata | 0.424 | 0.092 | 0.517 |
|
toy_modules | 0.004 | 0.000 | 0.001 |
|