BioC 3.5: BUILD BIN report for Linnorm on oaxaca

Package: Linnorm

Version: 1.99.16

Command: rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_1.99.16.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir

StartedAt: 2017-03-04 11:42:50 -0800 (Sat, 04 Mar 2017)

EndedAt: 2017-03-04 11:43:19 -0800 (Sat, 04 Mar 2017)

EllapsedTime: 28.5 seconds

RetCode: 0

Status:  OK

PackageFile: Linnorm_1.99.16.tgz

PackageFileSize: 4.237 MiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_1.99.16.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Linnorm.buildbin-libdir Linnorm_1.99.16.tar.gz'
>>>>>>> 

* installing *source* package ‘Linnorm’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c Misc.cpp -o Misc.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Linnorm.so Misc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/Linnorm.buildbin-libdir/Linnorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Linnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"