BioC 3.5: CHECK report for IntEREst on veracruz2

Package: IntEREst

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings IntEREst_1.0.0.tar.gz

StartedAt: 2017-08-16 04:21:37 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 04:25:25 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 227.8 seconds

RetCode: 0

Status:  OK

CheckDir: IntEREst.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings IntEREst_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/IntEREst.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IntEREst/DESCRIPTION’ ... OK
* this is package ‘IntEREst’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IntEREst’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘IntEREst’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IntEREst)

name	user	system	elapsed
addAnnotation	0.186	0.002	0.192
annotateU12	3.184	0.058	3.361
attributes	0.039	0.001	0.042
boxplot-method	0.281	0.005	0.290
buildSsTypePwms	0.001	0.000	0.001
counts-method	0.040	0.001	0.042
eBayesInterest	0.129	0.003	0.144
exactTestInterest	0.794	0.004	0.816
getRepeatTable	0.001	0.000	0.001
glmInterest	0.287	0.003	0.299
interest	3.272	0.045	3.405
interest.sequential	1.978	0.013	2.045
interestResult	0.019	0.001	0.019
intexIndex	0.002	0.000	0.003
lfc	0.508	0.002	0.531
mergeInterestResult	0.031	0.001	0.033
plot-method	0.290	0.003	0.297
qlfInterest	0.293	0.007	0.303
readInterestResults	0.034	0.002	0.038
referencePrepare	1.970	0.006	2.036
subInterestResult	0.057	0.001	0.058
treatInterest	0.106	0.003	0.117
u12Boxplot	0.056	0.001	0.057
u12BoxplotNb	0.083	0.000	0.089
u12DensityPlot	0.302	0.003	0.307
u12Index	0.004	0.000	0.004
u12NbIndex	0.052	0.000	0.053
updateRowDataCol	0.028	0.000	0.028