BioC 3.5: CHECK report for IdMappingAnalysis on tokay2

Package: IdMappingAnalysis

Version: 1.20.0

Command: rm -rf IdMappingAnalysis.buildbin-libdir IdMappingAnalysis.Rcheck && mkdir IdMappingAnalysis.buildbin-libdir IdMappingAnalysis.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IdMappingAnalysis.buildbin-libdir IdMappingAnalysis_1.20.0.tar.gz >IdMappingAnalysis.Rcheck\00install.out 2>&1 && cp IdMappingAnalysis.Rcheck\00install.out IdMappingAnalysis-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=IdMappingAnalysis.buildbin-libdir --install="check:IdMappingAnalysis-install.out" --force-multiarch --no-vignettes --timings IdMappingAnalysis_1.20.0.tar.gz

StartedAt: 2017-08-16 00:36:02 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 00:38:11 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 128.6 seconds

RetCode: 0

Status:  OK

CheckDir: IdMappingAnalysis.Rcheck

Warnings: 0

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###
### Running command:
###
###   rm -rf IdMappingAnalysis.buildbin-libdir IdMappingAnalysis.Rcheck && mkdir IdMappingAnalysis.buildbin-libdir IdMappingAnalysis.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IdMappingAnalysis.buildbin-libdir IdMappingAnalysis_1.20.0.tar.gz >IdMappingAnalysis.Rcheck\00install.out 2>&1 && cp IdMappingAnalysis.Rcheck\00install.out IdMappingAnalysis-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=IdMappingAnalysis.buildbin-libdir --install="check:IdMappingAnalysis-install.out" --force-multiarch --no-vignettes --timings IdMappingAnalysis_1.20.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/IdMappingAnalysis.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IdMappingAnalysis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IdMappingAnalysis' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IdMappingAnalysis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'Biobase'
  All declared Imports should be used.
Packages in Depends field not imported from:
  'R.oo' 'rChoiceDialogs'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.onAttach: no visible global function definition for
  'packageDescription'
Bootstrap: no visible global function definition for 'extend'
Bootstrap : FUN: no visible global function definition for 'cor'
Corr: no visible global function definition for 'extend'
Corr: no visible global function definition for 'throw'
Corr: no visible global function definition for 'cor'
CorrData: no visible global function definition for 'extend'
CorrData: no visible global function definition for 'Object'
DataFilter: no visible global function definition for 'extend'
DataFilter: no visible global function definition for 'Object'
Display: no visible global function definition for 'extend'
Display: no visible global function definition for 'Object'
IdMap: no visible global function definition for 'throw'
IdMap: no visible global function definition for 'extend'
IdMapBase: no visible global function definition for 'throw'
IdMapBase: no visible global function definition for 'extend'
IdMapBase: no visible global function definition for 'Object'
IdMapCounts: no visible global function definition for 'throw'
IdMapCounts: no visible global function definition for 'extend'
IdMapDiff: no visible global function definition for 'throw'
IdMapDiff: no visible global function definition for 'extend'
IdMapDiffCounts: no visible global function definition for 'extend'
JointIdMap: no visible global function definition for 'extend'
JointUniquePairs: no visible global function definition for 'extend'
Misc: no visible global function definition for 'extend'
Misc: no visible global function definition for 'Object'
Mixture: no visible global function definition for 'extend'
Mixture: no visible global function definition for 'Object'
Mixture: no visible global function definition for 'density'
Mixture : <anonymous>: no visible global function definition for
  'dnorm'
Subset: no visible global function definition for 'extend'
Subset: no visible global function definition for 'Object'
UniquePairs: no visible global function definition for 'throw'
UniquePairs: no visible global function definition for 'extend'
as.IdMap.UniquePairs: no visible global function definition for
  'getName'
as.MultiSet.CorrData: no visible global function definition for 'new'
as.data.frame.IdMapBase: no visible global function definition for
  'getName'
as.data.frame.IdMapBase: no visible global function definition for
  'throw'
as.data.frame.IdMapBase: no visible global function definition for 'as'
as.list.IdMap: no visible global function definition for 'throw'
boxplot.JointUniquePairs: no visible global function definition for
  'par'
boxplot.JointUniquePairs: no visible global function definition for
  'axis'
boxplot.JointUniquePairs: no visible global function definition for
  'text'
boxplotdataJitter.JointUniquePairs: no visible global function
  definition for 'par'
copy.Display: no visible global function definition for 'dev.cur'
copy.Display: no visible global function definition for 'par'
copy.Display: no visible global function definition for 'png'
copy.Display: no visible global function definition for 'jpeg'
copy.Display: no visible global function definition for 'tiff'
copy.Display: no visible global function definition for 'bmp'
copy.Display: no visible global function definition for 'pdf'
copy.Display: no visible global function definition for 'dev.set'
copy.Display: no visible global function definition for 'dev.copy'
copy.Display: no visible global function definition for 'dev.next'
copy.Display: no visible global function definition for 'dev.off'
corr.boxplot.JointUniquePairs: no visible global function definition
  for 'boxplot'
corr.boxplot.JointUniquePairs: no visible global function definition
  for 'abline'
create.Display: no visible global function definition for 'dev.new'
create.Display: no visible global function definition for 'par'
diffCounts.plot.JointIdMap: no visible global function definition for
  'rselect.list'
diffCounts.plot.JointIdMap: no visible global function definition for
  'par'
diffCounts.plot.JointIdMap: no visible global function definition for
  'plot'
ecdf.plot.JointIdMap: no visible global function definition for
  'rselect.list'
ecdf.plot.JointIdMap: no visible global function definition for 'par'
ecdf.plot.JointIdMap: no visible global function definition for 'plot'
fit2clusters: no visible global function definition for 'rbinom'
fit2clusters: no visible global function definition for 'rgamma'
fit2clusters: no visible global function definition for 'rnorm'
fit2clusters: no visible global function definition for 'dnorm'
fit2clusters: no visible global function definition for 'plot'
fit2clusters: no visible global function definition for 'lines'
fit2clusters: no visible global function definition for 'density'
fit2clusters: no visible global function definition for 'legend'
fit2clusters: no visible global function definition for 'par'
getCorr.JointUniquePairs: no visible global function definition for
  'equals'
getExperimentSet.CorrData: no visible global function definition for
  'throw'
getExperimentSet.CorrData: no visible global function definition for
  'new'
getIdMapList.JointIdMap: no visible global function definition for
  'throw'
interactive.plot.CorrData: no visible global function definition for
  'rselect.list'
interactive.plot.CorrData: no visible global function definition for
  'plot'
interactive.plot.JointUniquePairs: no visible global function
  definition for 'rselect.list'
interactive.plot.JointUniquePairs: no visible global function
  definition for 'par'
line.loess.Display: no visible global function definition for 'loess'
line.loess.Display: no visible global function definition for 'lines'
line.unsorted.Display: no visible global function definition for
  'lines'
merge.IdMap: no visible global function definition for 'getName'
mixture.boxplot.JointUniquePairs: no visible global function definition
  for 'boxplot'
mixture.boxplot.JointUniquePairs: no visible global function definition
  for 'abline'
mixture.plot.JointUniquePairs: no visible global function definition
  for 'plot'
plot.Bootstrap : BootstrapCorr.plot.internal: no visible global
  function definition for 'par'
plot.Bootstrap : BootstrapCorr.plot.internal: no visible global
  function definition for 'legend'
plot.Corr: no visible global function definition for 'density'
plot.Corr: no visible global function definition for 'plot.new'
plot.Corr: no visible global function definition for 'plot.window'
plot.Corr: no visible global function definition for 'axis'
plot.Corr: no visible global function definition for 'par'
plot.Corr: no visible global function definition for 'box'
plot.Corr: no visible global function definition for 'lines'
plot.Corr: no visible global function definition for 'legend'
plot.Corr: no visible global function definition for 'abline'
plot.CorrData: no visible global function definition for 'cor'
plot.CorrData: no visible global function definition for 'par'
plot.CorrData: no visible global function definition for 'plot'
plot.CorrData: no visible global function definition for 'box'
plot.CorrData: no visible global function definition for 'axis'
plot.CorrData: no visible global function definition for 'points'
plot.CorrData: no visible global function definition for 'title'
plot.IdMapCounts: no visible global function definition for 'plot.new'
plot.IdMapCounts: no visible global function definition for
  'plot.window'
plot.IdMapCounts: no visible global function definition for 'title'
plot.IdMapCounts: no visible global function definition for 'axis'
plot.IdMapCounts: no visible global function definition for 'par'
plot.IdMapCounts: no visible global function definition for 'box'
plot.IdMapCounts: no visible global function definition for 'ecdf'
plot.IdMapCounts: no visible global function definition for 'lines'
plot.IdMapCounts: no visible global function definition for 'legend'
plot.IdMapDiffCounts : plotValGroup: no visible global function
  definition for 'rect'
plot.IdMapDiffCounts: no visible global function definition for
  'plot.new'
plot.IdMapDiffCounts: no visible global function definition for 'par'
plot.IdMapDiffCounts: no visible global function definition for
  'plot.window'
plot.IdMapDiffCounts: no visible global function definition for 'title'
plot.IdMapDiffCounts: no visible global function definition for 'axis'
plot.IdMapDiffCounts: no visible global function definition for 'mtext'
plot.IdMapDiffCounts: no visible global function definition for 'lines'
plot.IdMapDiffCounts: no visible global function definition for 'text'
plot.IdMapDiffCounts: no visible global function definition for
  'abline'
plot.Mixture: no visible global function definition for 'plot.new'
plot.Mixture: no visible global function definition for 'plot.window'
plot.Mixture: no visible global function definition for 'axis'
plot.Mixture: no visible global function definition for 'par'
plot.Mixture: no visible global function definition for 'box'
plot.Mixture: no visible global function definition for 'lines'
plot.Mixture: no visible global function definition for 'density'
plot.Mixture: no visible global function definition for 'rug'
plot.Mixture: no visible global function definition for 'dnorm'
plot.Mixture : <anonymous>: no visible global function definition for
  'dnorm'
plot.Mixture: no visible global function definition for 'legend'
plot.Mixture: no visible global function definition for 'abline'
progressMsg.Display: no visible global function definition for
  'flush.console'
textBoundingBox.Display: no visible global function definition for
  'strwidth'
textBoundingBox.Display: no visible global function definition for
  'strheight'
textBoundingBox.Display: no visible global function definition for
  'par'
to.index.expr.Misc: no visible global function definition for 'tail'
unique.UniquePairs: no visible global function definition for 'getName'
zoom.pars.Display: no visible global function definition for 'par'
Undefined global functions or variables:
  Object abline as axis bmp box boxplot cor density dev.copy dev.cur
  dev.new dev.next dev.off dev.set dnorm ecdf equals extend
  flush.console getName jpeg legend lines loess mtext new
  packageDescription par pdf plot plot.new plot.window png points
  rbinom rect rgamma rnorm rselect.list rug strheight strwidth tail
  text throw tiff title
Consider adding
  importFrom("grDevices", "bmp", "dev.copy", "dev.cur", "dev.new",
             "dev.next", "dev.off", "dev.set", "jpeg", "pdf", "png",
             "tiff")
  importFrom("graphics", "abline", "axis", "box", "boxplot", "legend",
             "lines", "mtext", "par", "plot", "plot.new", "plot.window",
             "points", "rect", "rug", "strheight", "strwidth", "text",
             "title")
  importFrom("methods", "as", "new")
  importFrom("stats", "cor", "density", "dnorm", "ecdf", "loess",
             "rbinom", "rgamma", "rnorm")
  importFrom("utils", "flush.console", "packageDescription", "tail")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... NOTE
prepare_Rd: DataFilter.Rd:41-42: Dropping empty section \arguments
prepare_Rd: Display.Rd:41-42: Dropping empty section \arguments
prepare_Rd: Misc.Rd:41-42: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
getBootstrap.JointUniquePairs 5.73   0.02    5.75
Bootstrap                     5.60   0.02    5.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/IdMappingAnalysis.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'IdMappingAnalysis' ...
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'IdMappingAnalysis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IdMappingAnalysis' as IdMappingAnalysis_1.20.0.zip
* DONE (IdMappingAnalysis)

name	user	system	elapsed
000-LB-.IdMapBase	0.29	0.03	0.33
Bootstrap	4.50	0.02	4.51
Corr	0.23	0.00	0.23
CorrData	0.1	0.0	0.1
CsvList.merge.Misc	0	0	0
IdMap	0.01	0.00	0.01
IdMapBase	0	0	0
IdMapCounts	0.25	0.02	0.27
IdMapDiff	0.24	0.00	0.23
IdMapDiffCounts	0.18	0.00	0.19
JointIdMap	0.05	0.00	0.05
JointUniquePairs	0.36	0.00	0.36
Mixture	0.36	0.00	0.35
UniquePairs	0	0	0
aligned.IdMapBase	0.02	0.00	0.02
as.IdMap.UniquePairs	0.01	0.00	0.02
as.MultiSet.CorrData	0.42	0.01	0.43
as.UniquePairs.IdMap	0.01	0.00	0.01
as.data.frame.IdMapBase	0.11	0.00	0.11
as.data.frame.JointIdMap	0.05	0.00	0.05
as.list.IdMap	0.03	0.00	0.03
boxplot.JointUniquePairs	0.10	0.02	0.11
byColNames.Subset	0	0	0
byColumn.Subset	0	0	0
byRow.Subset	0	0	0
byRowNames.Subset	0.01	0.00	0.02
clust.Mixture	0	0	0
copy.Display	0	0	0
corr.boxplot.JointUniquePairs	0.20	0.01	0.22
corr.plot.JointUniquePairs	0.04	0.00	0.03
create.Display	0	0	0
create.UniquePairs	0.06	0.00	0.06
diffCounts.plot.JointIdMap	0.31	0.00	0.31
dim.IdMapBase	0.02	0.00	0.02
dimnames.IdMapBase	0	0	0
do.glm.JointUniquePairs	0	0	0
ecdf.plot.JointIdMap	0.61	0.00	0.61
equals.UniquePairs	0.03	0.00	0.03
fisherTransform.DataFilter	0	0	0
fisherTransformInverse.DataFilter	0	0	0
fisherTransformJacobean.DataFilter	0	0	0
getBootstrap.JointUniquePairs	4.24	0.00	4.24
getCompoundEvents.IdMapDiffCounts	0.18	0.00	0.19
getCompoundGroups.IdMapDiffCounts	0.19	0.00	0.18
getCorr.JointUniquePairs	0.1	0.0	0.1
getCorrData.JointUniquePairs	0.03	0.00	0.03
getCorrDataFrame.JointUniquePairs	0.01	0.00	0.01
getCounts.IdMap	0.02	0.00	0.02
getCounts.JointIdMap	0.08	0.00	0.08
getData.Corr	0	0	0
getData.Mixture	0.01	0.00	0.01
getDiff.JointIdMap	0.13	0.00	0.13
getExperimentSet.CorrData	0.09	0.02	0.11
getIdMapList.JointIdMap	0.06	0.00	0.06
getMapNames.JointIdMap	0.05	0.00	0.05
getMapNames.JointUniquePairs	0	0	0
getMatch.UniquePairs	0.03	0.00	0.03
getMatchInfo.JointIdMap	0.05	0.00	0.05
getMatchInfo.JointUniquePairs	0.2	0.0	0.2
getMixture.JointUniquePairs	0.3	0.0	0.3
getSampleNames.CorrData	0	0	0
getStats.IdMapCounts	0.2	0.0	0.2
getStats.Mixture	0	0	0
getUnionIdMap.JointIdMap	0.3	0.0	0.3
getUniquePairs.Corr	0.01	0.00	0.01
getUniquePairs.CorrData	0	0	0
getUniquePairs.JointUniquePairs	0	0	0
interactive.corr.boxplot.JointUniquePairs	0.11	0.00	0.11
interactive.corr.plot.JointUniquePairs	0.11	0.00	0.11
interactive.mixture.boxplot.JointUniquePairs	0.25	0.00	0.25
interactive.mixture.plot.JointUniquePairs	0.28	0.01	0.30
interactive.plot.CorrData	0.03	0.00	0.03
interactive.plot.JointUniquePairs	0	0	0
interleave.Misc	0	0	0
line.loess.Display	0	0	0
line.unsorted.Display	0	0	0
logTen.DataFilter	0.08	0.00	0.08
merge.IdMap	0.33	0.00	0.32
minAvgCountConstraint.DataFilter	0.17	0.00	0.18
minCountConstraint.DataFilter	0.08	0.00	0.07
minCountGroupConstraint.DataFilter	0.11	0.00	0.11
mixture.boxplot.JointUniquePairs	0.25	0.00	0.25
mixture.plot.JointUniquePairs	0.22	0.00	0.22
plot.Bootstrap	0.11	0.00	0.11
plot.Corr	0.05	0.00	0.05
plot.CorrData	0.07	0.00	0.08
plot.IdMapCounts	0.16	0.00	0.15
plot.IdMapDiffCounts	0.42	0.00	0.42
plot.Mixture	0.03	0.00	0.04
primaryIDs.IdMapBase	0	0	0
primaryKey.CorrData	0	0	0
primaryKey.IdMapBase	0	0	0
primaryKey.Mixture	0	0	0
progressMsg.Display	0	0	0
removeNASeries.DataFilter	0.11	0.00	0.11
secondaryKey.CorrData	0	0	0
secondaryKey.IdMapBase	0	0	0
secondaryKey.Mixture	0	0	0
subsetCorr.JointUniquePairs	0.01	0.00	0.02
subsetData.JointUniquePairs	0.02	0.00	0.01
subsetGroups.JointUniquePairs	0.41	0.00	0.41
summary.IdMapDiffCounts	0.17	0.00	0.17
swapKeys.IdMap	0.04	0.00	0.05
swapKeys.UniquePairs	0.05	0.00	0.04
textBoundingBox.Display	0	0	0
to.base.Misc	0	0	0
to.binary.logical.Misc	0.02	0.00	0.02
to.index.expr.Misc	0	0	0
unique.UniquePairs	0.03	0.00	0.03
words.Misc	0	0	0
zoom.pars.Display	0	0	0

name	user	system	elapsed
000-LB-.IdMapBase	0.26	0.01	0.28
Bootstrap	5.60	0.02	5.61
Corr	0.43	0.00	0.43
CorrData	0.09	0.00	0.09
CsvList.merge.Misc	0	0	0
IdMap	0.02	0.00	0.02
IdMapBase	0	0	0
IdMapCounts	0.32	0.00	0.32
IdMapDiff	0.3	0.0	0.3
IdMapDiffCounts	0.36	0.01	0.38
JointIdMap	0.05	0.00	0.04
JointUniquePairs	0.5	0.0	0.5
Mixture	0.59	0.00	0.64
UniquePairs	0.02	0.00	0.02
aligned.IdMapBase	0	0	0
as.IdMap.UniquePairs	0.03	0.00	0.03
as.MultiSet.CorrData	0.51	0.02	0.53
as.UniquePairs.IdMap	0.01	0.00	0.02
as.data.frame.IdMapBase	0.27	0.00	0.26
as.data.frame.JointIdMap	0.06	0.00	0.06
as.list.IdMap	0.05	0.00	0.05
boxplot.JointUniquePairs	0.16	0.00	0.16
byColNames.Subset	0	0	0
byColumn.Subset	0.01	0.00	0.01
byRow.Subset	0	0	0
byRowNames.Subset	0.02	0.00	0.02
clust.Mixture	0	0	0
copy.Display	0	0	0
corr.boxplot.JointUniquePairs	0.37	0.00	0.37
corr.plot.JointUniquePairs	0.06	0.00	0.06
create.Display	0	0	0
create.UniquePairs	0.06	0.00	0.06
diffCounts.plot.JointIdMap	0.48	0.00	0.48
dim.IdMapBase	0	0	0
dimnames.IdMapBase	0	0	0
do.glm.JointUniquePairs	0.01	0.00	0.01
ecdf.plot.JointIdMap	0.89	0.00	0.89
equals.UniquePairs	0.07	0.00	0.07
fisherTransform.DataFilter	0	0	0
fisherTransformInverse.DataFilter	0	0	0
fisherTransformJacobean.DataFilter	0	0	0
getBootstrap.JointUniquePairs	5.73	0.02	5.75
getCompoundEvents.IdMapDiffCounts	0.28	0.00	0.28
getCompoundGroups.IdMapDiffCounts	0.25	0.00	0.25
getCorr.JointUniquePairs	0.13	0.00	0.12
getCorrData.JointUniquePairs	0.04	0.00	0.05
getCorrDataFrame.JointUniquePairs	0.02	0.00	0.02
getCounts.IdMap	0.02	0.00	0.01
getCounts.JointIdMap	0.09	0.00	0.09
getData.Corr	0	0	0
getData.Mixture	0	0	0
getDiff.JointIdMap	0.17	0.00	0.18
getExperimentSet.CorrData	0.16	0.00	0.15
getIdMapList.JointIdMap	0.06	0.00	0.07
getMapNames.JointIdMap	0.05	0.00	0.04
getMapNames.JointUniquePairs	0	0	0
getMatch.UniquePairs	0.03	0.00	0.03
getMatchInfo.JointIdMap	0.05	0.00	0.05
getMatchInfo.JointUniquePairs	0.29	0.00	0.30
getMixture.JointUniquePairs	0.22	0.00	0.22
getSampleNames.CorrData	0.02	0.00	0.01
getStats.IdMapCounts	0.17	0.00	0.17
getStats.Mixture	0.01	0.00	0.02
getUnionIdMap.JointIdMap	0.35	0.00	0.34
getUniquePairs.Corr	0	0	0
getUniquePairs.CorrData	0	0	0
getUniquePairs.JointUniquePairs	0	0	0
interactive.corr.boxplot.JointUniquePairs	0.17	0.00	0.26
interactive.corr.plot.JointUniquePairs	0.19	0.02	0.21
interactive.mixture.boxplot.JointUniquePairs	0.36	0.01	0.37
interactive.mixture.plot.JointUniquePairs	0.45	0.02	0.47
interactive.plot.CorrData	0.03	0.00	0.03
interactive.plot.JointUniquePairs	0	0	0
interleave.Misc	0	0	0
line.loess.Display	0	0	0
line.unsorted.Display	0	0	0
logTen.DataFilter	0.06	0.00	0.06
merge.IdMap	0.47	0.00	0.47
minAvgCountConstraint.DataFilter	0.11	0.00	0.11
minCountConstraint.DataFilter	0.12	0.00	0.12
minCountGroupConstraint.DataFilter	0.22	0.01	0.24
mixture.boxplot.JointUniquePairs	0.28	0.00	0.89
mixture.plot.JointUniquePairs	0.42	0.00	0.42
plot.Bootstrap	0.16	0.00	0.16
plot.Corr	0.08	0.00	0.07
plot.CorrData	0.15	0.00	0.16
plot.IdMapCounts	0.24	0.00	0.24
plot.IdMapDiffCounts	0.59	0.00	0.59
plot.Mixture	0.03	0.00	0.03
primaryIDs.IdMapBase	0	0	0
primaryKey.CorrData	0	0	0
primaryKey.IdMapBase	0	0	0
primaryKey.Mixture	0	0	0
progressMsg.Display	0	0	0
removeNASeries.DataFilter	0.14	0.00	0.14
secondaryKey.CorrData	0	0	0
secondaryKey.IdMapBase	0	0	0
secondaryKey.Mixture	0	0	0
subsetCorr.JointUniquePairs	0.02	0.00	0.02
subsetData.JointUniquePairs	0.03	0.00	0.03
subsetGroups.JointUniquePairs	0.42	0.00	0.42
summary.IdMapDiffCounts	0.22	0.00	0.22
swapKeys.IdMap	0.06	0.00	0.06
swapKeys.UniquePairs	0.05	0.00	0.05
textBoundingBox.Display	0	0	0
to.base.Misc	0	0	0
to.binary.logical.Misc	0	0	0
to.index.expr.Misc	0	0	0
unique.UniquePairs	0.05	0.00	0.04
words.Misc	0	0	0
zoom.pars.Display	0	0	0