BioC 3.5: CHECK report for HDF5Array on tokay2

Package: HDF5Array

Version: 1.4.8

Command: rm -rf HDF5Array.buildbin-libdir HDF5Array.Rcheck && mkdir HDF5Array.buildbin-libdir HDF5Array.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HDF5Array.buildbin-libdir HDF5Array_1.4.8.tar.gz >HDF5Array.Rcheck\00install.out 2>&1 && cp HDF5Array.Rcheck\00install.out HDF5Array-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=HDF5Array.buildbin-libdir --install="check:HDF5Array-install.out" --force-multiarch --no-vignettes --timings HDF5Array_1.4.8.tar.gz

StartedAt: 2017-08-16 00:27:28 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 00:29:38 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 129.4 seconds

RetCode: 0

Status:  OK

CheckDir: HDF5Array.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HDF5Array.buildbin-libdir HDF5Array.Rcheck && mkdir HDF5Array.buildbin-libdir HDF5Array.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HDF5Array.buildbin-libdir HDF5Array_1.4.8.tar.gz >HDF5Array.Rcheck\00install.out 2>&1 && cp HDF5Array.Rcheck\00install.out HDF5Array-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=HDF5Array.buildbin-libdir --install="check:HDF5Array-install.out" --force-multiarch --no-vignettes --timings HDF5Array_1.4.8.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/HDF5Array.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HDF5Array/DESCRIPTION' ... OK
* this is package 'HDF5Array' version '1.4.8'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HDF5Array' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.9Mb
  sub-directories of 1Mb or more:
    extdata   7.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'BiocGenerics:::testPackage' 'S4Vectors:::sapply_isNULL'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
HDF5Array-class 7.18   2.11    9.83
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
HDF5Array-class 9.09   2.36   11.58
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'run_unitTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'run_unitTests.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/HDF5Array.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'HDF5Array' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'HDF5Array' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HDF5Array' as HDF5Array_1.4.8.zip
* DONE (HDF5Array)

name	user	system	elapsed
HDF5Array-class	7.18	2.11	9.83
dump-management	0.78	0.14	1.05
writeHDF5Array	0.50	0.22	0.71

name	user	system	elapsed
HDF5Array-class	9.09	2.36	11.58
dump-management	0.84	0.03	0.94
writeHDF5Array	0.77	0.15	0.92