HCsnip 1.16.0
Askar Obulkasim
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/HCsnip | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | ERROR | skipped | skipped | |
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### Running command:
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### chmod a+r HCsnip -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HCsnip
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* checking for file 'HCsnip/DESCRIPTION' ... OK
* preparing 'HCsnip':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: survival
Loading required package: coin
Loading required package: fpc
Loading required package: clusterRepro
Loading required package: impute
Loading required package: randomForestSRC
randomForestSRC 2.5.0
Type rfsrc.news() to see new features, changes, and bug fixes.
Loading required package: sm
Package 'sm', version 2.2-5.4: type help(sm) for summary information
Loading required package: sigaR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: CGHbase
Loading required package: marray
Loading required package: limma
Attaching package: 'limma'
The following object is masked from 'package:BiocGenerics':
plotMA
Loading required package: mvtnorm
The "ward" method has been renamed to "ward.D"; note new "ward.D2"
Error: processing vignette 'HCsnip.Rnw' failed with diagnostics:
chunk 6 (label = chunk6)
Error : 'surv_test' is defunct. Use 'logrank_test' instead.
Execution halted