BioC 3.5: CHECK report for GMRP on malbec2
This page was generated on 2017-08-16 13:17:25 -0400 (Wed, 16 Aug 2017).
GMRP 1.4.0 Yuan-De Tan
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/GMRP | Last Changed Rev: 129126 / Revision: 131943 | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | |
tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
Summary
Package: GMRP |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings GMRP_1.4.0.tar.gz |
StartedAt: 2017-08-15 23:31:01 -0400 (Tue, 15 Aug 2017) |
EndedAt: 2017-08-15 23:32:06 -0400 (Tue, 15 Aug 2017) |
EllapsedTime: 64.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GMRP.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings GMRP_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/GMRP.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GMRP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GMRP’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GMRP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
GMRP.Rcheck/00install.out:
* installing *source* package ‘GMRP’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GMRP)
GMRP.Rcheck/GMRP-Ex.timings:
name | user | system | elapsed
|
GMRP-package | 0.644 | 0.024 | 0.683 |
|
SNP358.data | 0.000 | 0.000 | 0.002 |
|
SNP368annot.data | 0.004 | 0.000 | 0.003 |
|
beta.data | 0.004 | 0.000 | 0.003 |
|
cad.data | 0.012 | 0.000 | 0.013 |
|
chrp | 0.024 | 0.008 | 0.035 |
|
fmerg | 0.004 | 0.000 | 0.007 |
|
lpd.data | 0.024 | 0.004 | 0.030 |
|
mktable | 0.228 | 0.012 | 0.237 |
|
path | 0.064 | 0.000 | 0.066 |
|
pathdiagram | 0.176 | 0.000 | 0.178 |
|
pathdiagram2 | 0.088 | 0.000 | 0.088 |
|
snpposit | 0.04 | 0.00 | 0.04 |
|
ucscannot | 0.352 | 0.000 | 0.352 |
|