BioC 3.5: BUILD BIN report for FamAgg on oaxaca

Package: FamAgg

Version: 1.3.3

Command: rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FamAgg_1.3.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FamAgg.buildbin-libdir

StartedAt: 2017-03-04 11:20:47 -0800 (Sat, 04 Mar 2017)

EndedAt: 2017-03-04 11:21:09 -0800 (Sat, 04 Mar 2017)

EllapsedTime: 22.4 seconds

RetCode: 0

Status:  OK

PackageFile: FamAgg_1.3.3.tgz

PackageFileSize: 1.226 MiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FamAgg_1.3.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FamAgg.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FamAgg.buildbin-libdir FamAgg_1.3.3.tar.gz'
>>>>>>> 

* installing *source* package ‘FamAgg’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘BiocGenerics::colMeans’ by ‘Matrix::colMeans’ when loading ‘FamAgg’
Warning: replacing previous import ‘BiocGenerics::colSums’ by ‘Matrix::colSums’ when loading ‘FamAgg’
Creating a new generic function for ‘pedigree’ in package ‘FamAgg’
in method for ‘countGenerations’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘countGenerations’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘estimateGenerations’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘estimateGenerations’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘findFounders’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘findFounders’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘generationsFrom’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘generationsFrom’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getAncestors’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getAncestors’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getChildren’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getChildren’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getCommonAncestor’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getCommonAncestor’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getMissingMate’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getMissingMate’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getSiblings’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getSiblings’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getAll’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getAll’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getExternalMatched’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getExternalMatched’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getGenerationMatched’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getGenerationMatched’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getGenerationSexMatched’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getGenerationSexMatched’ with signature ‘"pedigree"’: no definition for class “pedigree”
in method for ‘getSexMatched’ with signature ‘"pedigreeList"’: no definition for class “pedigreeList”
in method for ‘getSexMatched’ with signature ‘"pedigree"’: no definition for class “pedigree”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘BiocGenerics::colMeans’ by ‘Matrix::colMeans’ when loading ‘FamAgg’
Warning: replacing previous import ‘BiocGenerics::colSums’ by ‘Matrix::colSums’ when loading ‘FamAgg’
* DONE (FamAgg)