BioC 3.5: CHECK report for EnrichedHeatmap on malbec2

Package: EnrichedHeatmap

Version: 1.6.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings EnrichedHeatmap_1.6.0.tar.gz

StartedAt: 2017-08-15 22:48:30 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 22:50:36 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 126.0 seconds

RetCode: 0

Status:  OK

CheckDir: EnrichedHeatmap.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings EnrichedHeatmap_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/EnrichedHeatmap.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EnrichedHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EnrichedHeatmap’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EnrichedHeatmap’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       2.5Mb
    extdata   2.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
EnrichedHeatmap 10.232  0.052  10.290
anno_enriched    5.412  0.028   5.449
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-bioc/meat/EnrichedHeatmap.Rcheck/00check.log’
for details.

* installing *source* package ‘EnrichedHeatmap’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (EnrichedHeatmap)

name	user	system	elapsed
EnrichedHeatmap-class	0.000	0.000	0.001
EnrichedHeatmap	10.232	0.052	10.290
EnrichedHeatmapList-class	0	0	0
EnrichedHeatmapList	0	0	0
Extract.normalizedMatrix	0	0	0
add.AdditiveUnit	0.000	0.000	0.001
anno_enriched	5.412	0.028	5.449
copyAttr	0.004	0.000	0.001
default_smooth_fun	0.000	0.000	0.001
draw-EnrichedHeatmap-method	0.000	0.000	0.001
draw-EnrichedHeatmapList-method	0.000	0.000	0.001
draw-dispatch	0.000	0.000	0.001
enriched_score	0.000	0.000	0.001
getSignalsFromList	0.000	0.000	0.001
makeWindows	0.256	0.000	0.253
normalizeToMatrix	2.708	0.000	2.712
print.normalizedMatrix	0.000	0.000	0.001
show-EnrichedHeatmap-method	0	0	0
show-EnrichedHeatmapList-method	0	0	0
show-dispatch	0	0	0