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This page was generated on 2017-08-16 13:25:58 -0400 (Wed, 16 Aug 2017).
| Package 326/1382 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| DeepBlueR 1.2.10 Felipe Albrecht
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK |  | |||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | |||||
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: DeepBlueR |
| Version: 1.2.10 |
| Command: rm -rf DeepBlueR.buildbin-libdir DeepBlueR.Rcheck && mkdir DeepBlueR.buildbin-libdir DeepBlueR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DeepBlueR.buildbin-libdir DeepBlueR_1.2.10.tar.gz >DeepBlueR.Rcheck\00install.out 2>&1 && cp DeepBlueR.Rcheck\00install.out DeepBlueR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=DeepBlueR.buildbin-libdir --install="check:DeepBlueR-install.out" --force-multiarch --no-vignettes --timings DeepBlueR_1.2.10.tar.gz |
| StartedAt: 2017-08-15 23:10:16 -0400 (Tue, 15 Aug 2017) |
| EndedAt: 2017-08-15 23:17:31 -0400 (Tue, 15 Aug 2017) |
| EllapsedTime: 435.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DeepBlueR.Rcheck |
| Warnings: 0 |
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###
### Running command:
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### rm -rf DeepBlueR.buildbin-libdir DeepBlueR.Rcheck && mkdir DeepBlueR.buildbin-libdir DeepBlueR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DeepBlueR.buildbin-libdir DeepBlueR_1.2.10.tar.gz >DeepBlueR.Rcheck\00install.out 2>&1 && cp DeepBlueR.Rcheck\00install.out DeepBlueR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=DeepBlueR.buildbin-libdir --install="check:DeepBlueR-install.out" --force-multiarch --no-vignettes --timings DeepBlueR_1.2.10.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/DeepBlueR.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DeepBlueR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DeepBlueR' version '1.2.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DeepBlueR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
deepblue_batch_export_results 2.25 0.11 6.59
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
deepblue_batch_export_results 1.89 0.11 5.87
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
DeepBlueR.Rcheck/00install.out:
install for i386 * installing *source* package 'DeepBlueR' ... ** R ** demo ** inst ** preparing package for lazy loading Called method: deepblue_list_column_types Reported status was: okay Called method: deepblue_info Reported status was: okay ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'DeepBlueR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DeepBlueR' as DeepBlueR_1.2.10.zip * DONE (DeepBlueR)
DeepBlueR.Rcheck/examples_i386/DeepBlueR-Ex.timings:
| name | user | system | elapsed | |
| deepblue_aggregate | 0.72 | 0.03 | 1.46 | |
| deepblue_batch_export_results | 2.25 | 0.11 | 6.59 | |
| deepblue_binning | 0.02 | 0.03 | 0.86 | |
| deepblue_cache_status | 0.01 | 0.00 | 0.01 | |
| deepblue_cancel_request | 0.02 | 0.00 | 0.25 | |
| deepblue_chromosomes | 0.06 | 0.02 | 0.33 | |
| deepblue_clear_cache | 0 | 0 | 0 | |
| deepblue_collection_experiments_count | 0.05 | 0.00 | 0.30 | |
| deepblue_commands | 0.12 | 0.01 | 0.96 | |
| deepblue_count_gene_ontology_terms | 0.13 | 0.00 | 0.68 | |
| deepblue_count_regions | 0.03 | 0.00 | 0.85 | |
| deepblue_coverage | 0.03 | 0.00 | 0.89 | |
| deepblue_delete_request_from_cache | 0.02 | 0.00 | 0.01 | |
| deepblue_diff | 0.37 | 0.02 | 1.77 | |
| deepblue_distinct_column_values | 0.07 | 0.00 | 0.87 | |
| deepblue_download_request_data | 1.37 | 0.09 | 3.77 | |
| deepblue_echo | 0.03 | 0.00 | 0.25 | |
| deepblue_enrich_region_overlap | 0.81 | 0.00 | 4.62 | |
| deepblue_enrich_regions_go_terms | 0.11 | 0.02 | 1.21 | |
| deepblue_export_bed | 0.35 | 0.07 | 3.23 | |
| deepblue_export_meta_data | 0.34 | 0.00 | 0.69 | |
| deepblue_export_tab | 0.16 | 0.00 | 1.50 | |
| deepblue_extend | 0.04 | 0.00 | 0.52 | |
| deepblue_extract_ids | 0 | 0 | 0 | |
| deepblue_extract_names | 0 | 0 | 0 | |
| deepblue_faceting_experiments | 0.04 | 0.00 | 0.28 | |
| deepblue_filter_regions | 0.04 | 0.00 | 0.29 | |
| deepblue_find_motif | 0.05 | 0.00 | 0.27 | |
| deepblue_flank | 0.06 | 0.00 | 0.50 | |
| deepblue_get_biosource_children | 0.02 | 0.00 | 0.25 | |
| deepblue_get_biosource_parents | 0.03 | 0.00 | 0.25 | |
| deepblue_get_biosource_related | 0.03 | 0.00 | 0.26 | |
| deepblue_get_biosource_synonyms | 0.02 | 0.00 | 0.24 | |
| deepblue_get_experiments_by_query | 0.07 | 0.00 | 0.31 | |
| deepblue_get_regions | 0.05 | 0.00 | 0.95 | |
| deepblue_get_request_data | 0.11 | 0.00 | 1.46 | |
| deepblue_info | 0.06 | 0.00 | 0.29 | |
| deepblue_input_regions | 0.02 | 0.00 | 0.46 | |
| deepblue_intersection | 0.06 | 0.00 | 0.98 | |
| deepblue_is_biosource | 0.03 | 0.00 | 0.25 | |
| deepblue_liftover | 0.83 | 0.13 | 3.94 | |
| deepblue_list_annotations | 0.03 | 0.00 | 0.27 | |
| deepblue_list_biosources | 0.03 | 0.00 | 0.25 | |
| deepblue_list_cached_requests | 0 | 0 | 0 | |
| deepblue_list_column_types | 0.28 | 0.05 | 0.67 | |
| deepblue_list_epigenetic_marks | 0.33 | 0.00 | 0.92 | |
| deepblue_list_experiments | 0.08 | 0.00 | 0.31 | |
| deepblue_list_expressions | 0.17 | 0.00 | 0.64 | |
| deepblue_list_gene_models | 0.03 | 0.00 | 0.25 | |
| deepblue_list_genes | 0.30 | 0.00 | 1.27 | |
| deepblue_list_genomes | 0.03 | 0.00 | 0.25 | |
| deepblue_list_in_use | 0.34 | 0.00 | 1.36 | |
| deepblue_list_projects | 0.02 | 0.00 | 0.23 | |
| deepblue_list_recent_experiments | 0.05 | 0.00 | 0.27 | |
| deepblue_list_requests | 0.03 | 0.00 | 0.25 | |
| deepblue_list_samples | 0.09 | 0.01 | 0.59 | |
| deepblue_list_similar_biosources | 0.03 | 0.00 | 1.03 | |
| deepblue_list_similar_epigenetic_marks | 0.03 | 0.00 | 0.30 | |
| deepblue_list_similar_experiments | 0.04 | 0.00 | 1.66 | |
| deepblue_list_similar_genomes | 0.03 | 0.00 | 0.25 | |
| deepblue_list_similar_projects | 0.03 | 0.00 | 0.25 | |
| deepblue_list_similar_techniques | 0.03 | 0.00 | 0.25 | |
| deepblue_list_techniques | 0.05 | 0.00 | 0.26 | |
| deepblue_merge_queries | 0.06 | 0.00 | 0.77 | |
| deepblue_meta_data_to_table | 0.41 | 0.00 | 0.97 | |
| deepblue_name_to_id | 0.16 | 0.00 | 0.81 | |
| deepblue_overlap | 0.11 | 0.00 | 0.82 | |
| deepblue_preview_experiment | 0.01 | 0.00 | 0.26 | |
| deepblue_query_cache | 0.10 | 0.00 | 1.03 | |
| deepblue_query_experiment_type | 0.05 | 0.00 | 1.22 | |
| deepblue_reset_options | 0 | 0 | 0 | |
| deepblue_score_matrix | 0.09 | 0.00 | 0.90 | |
| deepblue_search | 0.06 | 0.00 | 0.60 | |
| deepblue_select_annotations | 0.04 | 0.00 | 0.25 | |
| deepblue_select_column | 0.46 | 0.00 | 1.18 | |
| deepblue_select_experiments | 0.04 | 0.00 | 0.27 | |
| deepblue_select_expressions | 0.01 | 0.00 | 0.36 | |
| deepblue_select_genes | 0.01 | 0.00 | 0.34 | |
| deepblue_select_regions | 0.06 | 0.00 | 0.91 | |
| deepblue_tiling_regions | 0.03 | 0.00 | 0.25 | |
DeepBlueR.Rcheck/examples_x64/DeepBlueR-Ex.timings:
| name | user | system | elapsed | |
| deepblue_aggregate | 0.82 | 0.03 | 1.54 | |
| deepblue_batch_export_results | 1.89 | 0.11 | 5.87 | |
| deepblue_binning | 0.05 | 0.00 | 0.86 | |
| deepblue_cache_status | 0.00 | 0.00 | 0.06 | |
| deepblue_cancel_request | 0.04 | 0.00 | 0.25 | |
| deepblue_chromosomes | 0.11 | 0.00 | 0.36 | |
| deepblue_clear_cache | 0 | 0 | 0 | |
| deepblue_collection_experiments_count | 0.04 | 0.00 | 0.32 | |
| deepblue_commands | 0.12 | 0.00 | 0.95 | |
| deepblue_count_gene_ontology_terms | 0.16 | 0.00 | 0.72 | |
| deepblue_count_regions | 0.06 | 0.00 | 0.89 | |
| deepblue_coverage | 0.05 | 0.00 | 0.88 | |
| deepblue_delete_request_from_cache | 0 | 0 | 0 | |
| deepblue_diff | 0.46 | 0.04 | 0.97 | |
| deepblue_distinct_column_values | 0.06 | 0.00 | 0.91 | |
| deepblue_download_request_data | 1.06 | 0.10 | 3.45 | |
| deepblue_echo | 0.02 | 0.00 | 0.25 | |
| deepblue_enrich_region_overlap | 1.03 | 0.00 | 4.71 | |
| deepblue_enrich_regions_go_terms | 0.16 | 0.00 | 1.20 | |
| deepblue_export_bed | 0.39 | 0.17 | 3.36 | |
| deepblue_export_meta_data | 0.79 | 0.00 | 1.14 | |
| deepblue_export_tab | 0.16 | 0.00 | 1.51 | |
| deepblue_extend | 0.06 | 0.00 | 0.52 | |
| deepblue_extract_ids | 0 | 0 | 0 | |
| deepblue_extract_names | 0.02 | 0.00 | 0.02 | |
| deepblue_faceting_experiments | 0.04 | 0.00 | 0.29 | |
| deepblue_filter_regions | 0.05 | 0.00 | 0.30 | |
| deepblue_find_motif | 0.05 | 0.00 | 0.28 | |
| deepblue_flank | 0.08 | 0.00 | 0.51 | |
| deepblue_get_biosource_children | 0.04 | 0.00 | 0.27 | |
| deepblue_get_biosource_parents | 0.03 | 0.00 | 0.25 | |
| deepblue_get_biosource_related | 0.04 | 0.00 | 0.26 | |
| deepblue_get_biosource_synonyms | 0.03 | 0.00 | 0.25 | |
| deepblue_get_experiments_by_query | 0.07 | 0.00 | 0.32 | |
| deepblue_get_regions | 0.07 | 0.00 | 0.93 | |
| deepblue_get_request_data | 0.18 | 0.00 | 1.47 | |
| deepblue_info | 0.05 | 0.00 | 0.28 | |
| deepblue_input_regions | 0.03 | 0.00 | 0.53 | |
| deepblue_intersection | 0.11 | 0.00 | 1.02 | |
| deepblue_is_biosource | 0.03 | 0.00 | 0.25 | |
| deepblue_liftover | 0.82 | 0.14 | 3.86 | |
| deepblue_list_annotations | 0.04 | 0.00 | 0.26 | |
| deepblue_list_biosources | 0.03 | 0.00 | 0.25 | |
| deepblue_list_cached_requests | 0 | 0 | 0 | |
| deepblue_list_column_types | 0.36 | 0.00 | 0.71 | |
| deepblue_list_epigenetic_marks | 0.44 | 0.00 | 1.04 | |
| deepblue_list_experiments | 0.11 | 0.00 | 0.36 | |
| deepblue_list_expressions | 0.23 | 0.00 | 0.60 | |
| deepblue_list_gene_models | 0.04 | 0.00 | 0.26 | |
| deepblue_list_genes | 0.43 | 0.00 | 1.39 | |
| deepblue_list_genomes | 0.02 | 0.00 | 0.25 | |
| deepblue_list_in_use | 0.41 | 0.00 | 1.52 | |
| deepblue_list_projects | 0.01 | 0.01 | 0.25 | |
| deepblue_list_recent_experiments | 0.05 | 0.00 | 0.28 | |
| deepblue_list_requests | 0.03 | 0.00 | 0.25 | |
| deepblue_list_samples | 0.11 | 0.03 | 0.61 | |
| deepblue_list_similar_biosources | 0.05 | 0.00 | 1.03 | |
| deepblue_list_similar_epigenetic_marks | 0.04 | 0.00 | 0.30 | |
| deepblue_list_similar_experiments | 0.02 | 0.00 | 1.65 | |
| deepblue_list_similar_genomes | 0.01 | 0.00 | 0.25 | |
| deepblue_list_similar_projects | 0.03 | 0.00 | 0.25 | |
| deepblue_list_similar_techniques | 0.04 | 0.00 | 0.25 | |
| deepblue_list_techniques | 0.04 | 0.00 | 0.27 | |
| deepblue_merge_queries | 0.10 | 0.00 | 1.31 | |
| deepblue_meta_data_to_table | 0.36 | 0.00 | 0.94 | |
| deepblue_name_to_id | 0.15 | 0.00 | 0.82 | |
| deepblue_overlap | 0.10 | 0.00 | 0.79 | |
| deepblue_preview_experiment | 0.01 | 0.00 | 0.26 | |
| deepblue_query_cache | 0.17 | 0.00 | 1.08 | |
| deepblue_query_experiment_type | 0.07 | 0.01 | 1.26 | |
| deepblue_reset_options | 0 | 0 | 0 | |
| deepblue_score_matrix | 0.09 | 0.02 | 0.94 | |
| deepblue_search | 0.06 | 0.02 | 0.62 | |
| deepblue_select_annotations | 0.03 | 0.00 | 0.27 | |
| deepblue_select_column | 0.64 | 0.00 | 1.45 | |
| deepblue_select_experiments | 0.05 | 0.00 | 0.27 | |
| deepblue_select_expressions | 0.03 | 0.00 | 0.36 | |
| deepblue_select_genes | 0.03 | 0.00 | 0.37 | |
| deepblue_select_regions | 0.06 | 0.00 | 0.89 | |
| deepblue_tiling_regions | 0.05 | 0.00 | 0.26 | |