ChemmineOB 1.14.0
Thomas Girke
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/ChemmineOB | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/ChemmineOB_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=ChemmineOB.buildbin-libdir --merge-multiarch ChemmineOB_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL ChemmineOB_1.14.0.zip && rm ChemmineOB_1.14.0.tar.gz ChemmineOB_1.14.0.zip
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100 957k 100 957k 0 0 9305k 0 --:--:-- --:--:-- --:--:-- 9484k
install for i386
* installing *source* package 'ChemmineOB' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -IC:/openbabel/src/i386/include -O2 -Wall -mtune=core2 -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
const char *p = typeName;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -IC:/openbabel/src/i386/include -O2 -Wall -mtune=core2 -c canonical.cpp -o canonical.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel/bin/i386/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.5-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs/i386
** R
** inst
** preparing package for lazy loading
in method for 'copyToR' with signature '"_p_std::pair<(unsigned int,unsigned int)>"': no definition for class "_p_std::pair<(unsigned int,unsigned int)>"
in method for 'copyToR' with signature '"_p_OpenBabel::DoubleType"': no definition for class "_p_OpenBabel::DoubleType"
in method for 'copyToR' with signature '"_p_OpenBabel::CharPtrLess"': no definition for class "_p_OpenBabel::CharPtrLess"
in method for 'copyToR' with signature '"_p_OpenBabel::FptIndexHeader"': no definition for class "_p_OpenBabel::FptIndexHeader"
in method for 'copyToR' with signature '"_p_OpenBabel::LineSearchType"': no definition for class "_p_OpenBabel::LineSearchType"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ChemmineOB' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -IC:/openbabel/src/x64/include -O2 -Wall -mtune=core2 -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
const char *p = typeName;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -IC:/openbabel/src/x64/include -O2 -Wall -mtune=core2 -c canonical.cpp -o canonical.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel/bin/x64/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.5-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChemmineOB' as ChemmineOB_1.14.0.zip
* DONE (ChemmineOB)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'ChemmineOB' successfully unpacked and MD5 sums checked