COMPASS 1.14.0
Greg Finak
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/COMPASS | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | [ ERROR ] | skipped | skipped | |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
###
##############################################################################
##############################################################################
* checking for file ‘COMPASS/DESCRIPTION’ ... OK
* preparing ‘COMPASS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘COMPASS’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c COMPASS_c.c -o COMPASS_c.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c COMPASS_cpp.cpp -o COMPASS_cpp.o
COMPASS_cpp.cpp:40:35: error: no matching function for call to 'sapply'
IntegerVector c_combo_abs = sapply(c_combo, ::abs);
^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/Rcpp/sugar/functions/sapply.h:126:1: note: candidate template ignored: couldn't infer template argument 'Function'
sapply( const Rcpp::VectorBase<RTYPE,NA,T>& t, Function fun ){
^
/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/Rcpp/vector/ListOf.h:134:3: note: candidate template ignored: could not match 'ListOf' against 'Vector'
T sapply(const ListOf<T>& t, Function fun) {
^
1 error generated.
make: *** [COMPASS_cpp.o] Error 1
ERROR: compilation failed for package ‘COMPASS’
* removing ‘/private/tmp/RtmpYOI8Q7/Rinst13db94922d3e6/COMPASS’
-----------------------------------
ERROR: package installation failed