CNEr 1.12.1
Ge Tan
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/CNEr | | Last Changed Rev: 131062 / Revision: 131943 | | Last Changed Date: 2017-07-09 14:57:38 -0400 (Sun, 09 Jul 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd CNEr.buildbin-libdir/CNEr && zip -r ../../CNEr_1.12.1.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: data/ (304 bytes security) (stored 0%)
adding: data/axisTrack.rda (264 bytes security) (stored 0%)
adding: data/CNEDanRer10Hg38.rda (264 bytes security) (stored 0%)
adding: data/cneFinalListDanRer10Hg38.rda (264 bytes security) (stored 0%)
adding: data/CNEHg38DanRer10.rda (264 bytes security) (stored 0%)
adding: data/cpgIslands.rda (264 bytes security) (stored 0%)
adding: data/grangesPairsForDotplot.rda (264 bytes security) (stored 0%)
adding: data/refGenes.rda (264 bytes security) (stored 0%)
adding: DESCRIPTION (264 bytes security) (deflated 48%)
adding: doc/ (304 bytes security) (stored 0%)
adding: doc/CNEr.html (264 bytes security) (deflated 48%)
adding: doc/CNEr.R (264 bytes security) (deflated 78%)
adding: doc/CNEr.Rmd (264 bytes security) (deflated 69%)
adding: doc/index.html (264 bytes security) (deflated 67%)
adding: doc/PairwiseWholeGenomeAlignment.html (264 bytes security) (deflated 63%)
adding: doc/PairwiseWholeGenomeAlignment.R (264 bytes security) (deflated 79%)
adding: doc/PairwiseWholeGenomeAlignment.Rmd (264 bytes security) (deflated 67%)
adding: extdata/ (304 bytes security) (stored 0%)
adding: extdata/chr4.hg19.galGal3.net.axt.gz (264 bytes security) (deflated 0%)
adding: extdata/cne2wBf_AstMex102_danRer10_48_50 (264 bytes security) (deflated 71%)
adding: extdata/cne2wBf_cteIde1_danRer10_100_100 (264 bytes security) (deflated 73%)
adding: extdata/cne2wBf_cypCar1_danRer10_100_100 (264 bytes security) (deflated 71%)
adding: extdata/cne2wBf_danRer10_hg38_45_50 (264 bytes security) (deflated 58%)
adding: extdata/danRer10.hg38.net.axt (264 bytes security) (deflated 70%)
adding: extdata/danRer10CNE.sqlite (264 bytes security) (deflated 57%)
adding: extdata/filter_regions.danRer10.bed (264 bytes security) (deflated 76%)
adding: extdata/filter_regions.hg38.bed (264 bytes security) (deflated 75%)
adding: extdata/hg38.danRer10.net.axt (264 bytes security) (deflated 68%)
adding: extdata/rmsk.fa (264 bytes security) (stored 0%)
adding: help/ (304 bytes security) (stored 0%)
adding: help/aliases.rds (264 bytes security) (stored 0%)
adding: help/AnIndex (264 bytes security) (deflated 75%)
adding: help/CNEr.rdb (264 bytes security) (deflated 1%)
adding: help/CNEr.rdx (264 bytes security) (stored 0%)
adding: help/paths.rds (264 bytes security) (stored 0%)
adding: html/ (304 bytes security) (stored 0%)
adding: html/00Index.html (264 bytes security) (deflated 84%)
adding: html/R.css (264 bytes security) (deflated 75%)
adding: INDEX (264 bytes security) (deflated 63%)
adding: libs/ (304 bytes security) (stored 0%)
adding: libs/i386/ (304 bytes security) (stored 0%)
adding: libs/i386/CNEr.dll (264 bytes security) (deflated 59%)
adding: libs/x64/ (304 bytes security) (stored 0%)
adding: libs/x64/CNEr.dll (264 bytes security) (deflated 55%)
adding: LICENSE (264 bytes security) (deflated 44%)
adding: MD5 (264 bytes security) (deflated 46%)
adding: Meta/ (304 bytes security) (stored 0%)
adding: Meta/data.rds (264 bytes security) (stored 0%)
adding: Meta/features.rds (264 bytes security) (stored 0%)
adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
adding: Meta/links.rds (264 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
adding: Meta/package.rds (264 bytes security) (stored 0%)
adding: Meta/Rd.rds (264 bytes security) (stored 0%)
adding: Meta/vignette.rds (264 bytes security) (stored 0%)
adding: NAMESPACE (264 bytes security) (deflated 65%)
adding: NEWS (264 bytes security) (deflated 57%)
adding: obsolete/ (304 bytes security) (stored 0%)
adding: obsolete/ceScan.r (264 bytes security) (deflated 67%)
adding: obsolete/ceScanR.r (264 bytes security) (deflated 69%)
adding: obsolete/class.r (264 bytes security) (deflated 74%)
adding: obsolete/CNEr.Rnw (264 bytes security) (deflated 69%)
adding: obsolete/src/ (304 bytes security) (stored 0%)
adding: obsolete/src/ceScan.c (264 bytes security) (deflated 68%)
adding: obsolete/src/ceScanBranch1.c (264 bytes security) (deflated 73%)
adding: obsolete/src/ceScanBranch2.c (264 bytes security) (deflated 72%)
adding: obsolete/src/compile (264 bytes security) (deflated 92%)
adding: R/ (304 bytes security) (stored 0%)
adding: R/CNEr (264 bytes security) (deflated 41%)
adding: R/CNEr.rdb (264 bytes security) (deflated 19%)
adding: R/CNEr.rdx (264 bytes security) (deflated 0%)
adding: scripts/ (304 bytes security) (stored 0%)
adding: scripts/danRer10Pipeline.R (264 bytes security) (deflated 64%)
adding: scripts/prepareData.R (264 bytes security) (deflated 73%)