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BioC 3.5: BUILD BIN report for CNAnorm on oaxaca

This page was generated on 2017-03-04 16:41:57 -0500 (Sat, 04 Mar 2017).

Package 231/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNAnorm 1.21.0
Stefano Berri
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CNAnorm
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: CNAnorm
Version: 1.21.0
Command: rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNAnorm.buildbin-libdir
StartedAt: 2017-03-04 11:05:50 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 11:06:13 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 22.8 seconds
RetCode: 0
Status:  OK 
PackageFile: CNAnorm_1.21.0.tgz
PackageFileSize: 803.2 KiB

Command output

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###
### Running command:
###
###   rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNAnorm.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNAnorm.buildbin-libdir CNAnorm_1.21.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CNAnorm’ ...
** libs
gfortran-4.8   -fPIC  -g -O2  -c daxpy.f -o daxpy.o
gfortran-4.8   -fPIC  -g -O2  -c ddot.f -o ddot.o
gfortran-4.8   -fPIC  -g -O2  -c dgbfa.f -o dgbfa.o
gfortran-4.8   -fPIC  -g -O2  -c dgbsl.f -o dgbsl.o
gfortran-4.8   -fPIC  -g -O2  -c dscal.f -o dscal.o
gfortran-4.8   -fPIC  -g -O2  -c dsmooth.f -o dsmooth.o
gfortran-4.8   -fPIC  -g -O2  -c idamax.f -o idamax.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNAnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs//CNAnorm.so"