BioC 3.5: CHECK report for BiocStyle on malbec2
This page was generated on 2017-08-16 13:15:07 -0400 (Wed, 16 Aug 2017).
BiocStyle 2.4.1 Bioconductor Package Maintainer
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/BiocStyle | Last Changed Rev: 131461 / Revision: 131943 | Last Changed Date: 2017-07-21 06:37:48 -0400 (Fri, 21 Jul 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |  |
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |  |
Summary
Package: BiocStyle |
Version: 2.4.1 |
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings BiocStyle_2.4.1.tar.gz |
StartedAt: 2017-08-15 21:30:56 -0400 (Tue, 15 Aug 2017) |
EndedAt: 2017-08-15 21:31:23 -0400 (Tue, 15 Aug 2017) |
EllapsedTime: 26.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BiocStyle.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings BiocStyle_2.4.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/BiocStyle.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocStyle/DESCRIPTION’ ... OK
* this is package ‘BiocStyle’ version ‘2.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocStyle’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘rmarkdown:::from_rmarkdown’
See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
‘rmarkdown:::normalize_path’ ‘rmarkdown:::pandoc_html_highlight_args’
‘rmarkdown:::partition_yaml_front_matter’
‘rmarkdown:::rmarkdown_system_file’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘run_tests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.5-bioc/meat/BiocStyle.Rcheck/00check.log’
for details.
BiocStyle.Rcheck/00install.out:
* installing *source* package ‘BiocStyle’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BiocStyle)
BiocStyle.Rcheck/BiocStyle-Ex.timings:
name | user | system | elapsed
|
helpers | 0.000 | 0.004 | 0.002 |
|
html_document | 0 | 0 | 0 |
|
latex | 0 | 0 | 0 |
|
latex2 | 0 | 0 | 0 |
|
macros | 0.004 | 0.000 | 0.001 |
|
markdown | 0.000 | 0.000 | 0.001 |
|
md_document | 0.000 | 0.000 | 0.001 |
|
output | 0.000 | 0.000 | 0.001 |
|
pdf_document | 0 | 0 | 0 |
|