| Back to the "Multiple platform build/check report" | A [B] C D E F G H I J K L M N O P Q R S T U V W X Y Z |
This page was generated on 2017-08-16 13:26:51 -0400 (Wed, 16 Aug 2017).
| Package 127/1382 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| BioMedR 1.0.0 Min-feng Zhu
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | ERROR | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ ERROR ] | OK | ||||||
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | ERROR | OK |
| Package: BioMedR |
| Version: 1.0.0 |
| Command: rm -rf BioMedR.buildbin-libdir BioMedR.Rcheck && mkdir BioMedR.buildbin-libdir BioMedR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BioMedR.buildbin-libdir BioMedR_1.0.0.tar.gz >BioMedR.Rcheck\00install.out 2>&1 && cp BioMedR.Rcheck\00install.out BioMedR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=BioMedR.buildbin-libdir --install="check:BioMedR-install.out" --force-multiarch --no-vignettes --timings BioMedR_1.0.0.tar.gz |
| StartedAt: 2017-08-15 22:18:40 -0400 (Tue, 15 Aug 2017) |
| EndedAt: 2017-08-15 22:24:35 -0400 (Tue, 15 Aug 2017) |
| EllapsedTime: 354.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: BioMedR.Rcheck |
| Warnings: NA |
##############################################################################
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###
### Running command:
###
### rm -rf BioMedR.buildbin-libdir BioMedR.Rcheck && mkdir BioMedR.buildbin-libdir BioMedR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BioMedR.buildbin-libdir BioMedR_1.0.0.tar.gz >BioMedR.Rcheck\00install.out 2>&1 && cp BioMedR.Rcheck\00install.out BioMedR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=BioMedR.buildbin-libdir --install="check:BioMedR-install.out" --force-multiarch --no-vignettes --timings BioMedR_1.0.0.tar.gz
###
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##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/BioMedR.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BioMedR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BioMedR' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BioMedR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
parSeqSim 0.67 0.03 13.3
calcParProtSeqSim 0.25 0.00 6.2
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
extrDrugKR 7.50 0.10 1.43
extrDrugMannholdLogP 6.06 0.07 3.53
parSeqSim 0.67 0.03 14.64
calcParProtSeqSim 0.27 0.02 6.97
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
Warning message:
running command '"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386/R" CMD BATCH --vanilla "runTests.R" "runTests.Rout"' had status 1
ERROR
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
1 Test Suite :
BioMedR RUnit Tests - 7 test functions, 0 errors, 1 failure
FAILURE in test_extrDrugALOGP: Error in checkEqualsNumeric(sum(as.matrix(dat)), 328.1937635, tolerance = 1e-04) :
Mean relative difference: 0.04145779
Test files with failing tests
test_extractDrugALOGP.R
test_extrDrugALOGP
Error in BiocGenerics:::testPackage("BioMedR") :
unit tests failed for package BioMedR
Execution halted
** running tests for arch 'x64' ...
Running 'runTests.R'
Warning message:
running command '"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64/R" CMD BATCH --vanilla "runTests.R" "runTests.Rout"' had status 1
ERROR
Running the tests in 'tests/runTests.R' failed.
Last 13 lines of output:
1 Test Suite :
BioMedR RUnit Tests - 7 test functions, 0 errors, 1 failure
FAILURE in test_extrDrugALOGP: Error in checkEqualsNumeric(sum(as.matrix(dat)), 328.1937635, tolerance = 1e-04) :
Mean relative difference: 0.04145779
Test files with failing tests
test_extractDrugALOGP.R
test_extrDrugALOGP
Error in BiocGenerics:::testPackage("BioMedR") :
unit tests failed for package BioMedR
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/BioMedR.Rcheck/00check.log'
for details.
runTests.Rout.fail:
R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('BioMedR')
Timing stopped at: 0.53 0.01 0.45
Error in checkEqualsNumeric(sum(as.matrix(dat)), 328.1937635, tolerance = 1e-04) :
Mean relative difference: 0.04145779
RUNIT TEST PROTOCOL -- Tue Aug 15 22:24:12 2017
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 1
1 Test Suite :
BioMedR RUnit Tests - 7 test functions, 0 errors, 1 failure
FAILURE in test_extrDrugALOGP: Error in checkEqualsNumeric(sum(as.matrix(dat)), 328.1937635, tolerance = 1e-04) :
Mean relative difference: 0.04145779
Test files with failing tests
test_extractDrugALOGP.R
test_extrDrugALOGP
Error in BiocGenerics:::testPackage("BioMedR") :
unit tests failed for package BioMedR
Execution halted
runTests.Rout.fail:
R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('BioMedR')
Timing stopped at: 1.19 0.15 0.7
Error in checkEqualsNumeric(sum(as.matrix(dat)), 328.1937635, tolerance = 1e-04) :
Mean relative difference: 0.04145779
RUNIT TEST PROTOCOL -- Tue Aug 15 22:24:20 2017
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 1
1 Test Suite :
BioMedR RUnit Tests - 7 test functions, 0 errors, 1 failure
FAILURE in test_extrDrugALOGP: Error in checkEqualsNumeric(sum(as.matrix(dat)), 328.1937635, tolerance = 1e-04) :
Mean relative difference: 0.04145779
Test files with failing tests
test_extractDrugALOGP.R
test_extrDrugALOGP
Error in BiocGenerics:::testPackage("BioMedR") :
unit tests failed for package BioMedR
Execution halted
BioMedR.Rcheck/00install.out:
install for i386 * installing *source* package 'BioMedR' ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'BioMedR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'BioMedR' as BioMedR_1.0.0.zip * DONE (BioMedR)
BioMedR.Rcheck/examples_i386/BioMedR-Ex.timings:
| name | user | system | elapsed | |
| AA2DACOR | 0.03 | 0.00 | 0.03 | |
| AA3DMoRSE | 0 | 0 | 0 | |
| AAACF | 0 | 0 | 0 | |
| AABLOSUM100 | 0 | 0 | 0 | |
| AABLOSUM45 | 0 | 0 | 0 | |
| AABLOSUM50 | 0.00 | 0.01 | 0.02 | |
| AABLOSUM62 | 0 | 0 | 0 | |
| AABLOSUM80 | 0.01 | 0.00 | 0.01 | |
| AABurden | 0 | 0 | 0 | |
| AACPSA | 0.02 | 0.00 | 0.02 | |
| AAConn | 0 | 0 | 0 | |
| AAConst | 0.00 | 0.02 | 0.02 | |
| AADescAll | 0 | 0 | 0 | |
| AAEdgeAdj | 0 | 0 | 0 | |
| AAEigIdx | 0.01 | 0.00 | 0.01 | |
| AAFGC | 0 | 0 | 0 | |
| AAGETAWAY | 0 | 0 | 0 | |
| AAGeom | 0.00 | 0.01 | 0.02 | |
| AAInfo | 0 | 0 | 0 | |
| AAMOE2D | 0 | 0 | 0 | |
| AAMOE3D | 0.00 | 0.02 | 0.01 | |
| AAMetaInfo | 0 | 0 | 0 | |
| AAMolProp | 0.00 | 0.01 | 0.02 | |
| AAPAM120 | 0 | 0 | 0 | |
| AAPAM250 | 0.02 | 0.00 | 0.01 | |
| AAPAM30 | 0 | 0 | 0 | |
| AAPAM40 | 0.02 | 0.00 | 0.02 | |
| AAPAM70 | 0 | 0 | 0 | |
| AARDF | 0 | 0 | 0 | |
| AARandic | 0 | 0 | 0 | |
| AATopo | 0.01 | 0.00 | 0.01 | |
| AATopoChg | 0 | 0 | 0 | |
| AAWHIM | 0 | 0 | 0 | |
| AAWalk | 0.00 | 0.02 | 0.02 | |
| AAindex | 0 | 0 | 0 | |
| Autocorrelation | 0.91 | 0.06 | 3.61 | |
| BMgetDNAGenBank | 0 | 0 | 0 | |
| BioMedR-package | 0 | 0 | 0 | |
| Constitutional | 0.40 | 0.00 | 0.73 | |
| NNeighbors | 1.11 | 0.07 | 1.18 | |
| OptAA3d | 0 | 0 | 0 | |
| acc | 0.00 | 0.01 | 0.01 | |
| apfp | 0 | 0 | 0 | |
| atomprop | 0 | 0 | 0 | |
| bcl | 0.00 | 0.02 | 0.02 | |
| calcDrugFPSim | 0 | 0 | 0 | |
| calcDrugMCSSim | 0.64 | 0.06 | 1.83 | |
| calcParProtGOSim | 0 | 0 | 0 | |
| calcParProtSeqSim | 0.25 | 0.00 | 6.20 | |
| calcTwoProtGOSim | 0 | 0 | 0 | |
| calcTwoProtSeqSim | 0.16 | 0.00 | 0.15 | |
| checkDNA | 0 | 0 | 0 | |
| checkProt | 0 | 0 | 0 | |
| clusterCMP | 1.37 | 0.01 | 1.40 | |
| clusterJP | 1.88 | 0.00 | 1.87 | |
| clusterMDS | 0.66 | 0.00 | 0.66 | |
| clusterStat | 0.32 | 0.00 | 0.32 | |
| connectivity | 1.58 | 0.00 | 1.82 | |
| convAPtoFP | 0.25 | 0.00 | 0.25 | |
| convSDFtoAP | 0.05 | 0.00 | 0.04 | |
| extrDNADAC | 0 | 0 | 0 | |
| extrDNADACC | 0.08 | 0.00 | 0.08 | |
| extrDNADCC | 0.08 | 0.00 | 0.08 | |
| extrDNAIncDiv | 0.12 | 0.02 | 0.14 | |
| extrDNAPseDNC | 0 | 0 | 0 | |
| extrDNAPseKNC | 0.02 | 0.00 | 0.02 | |
| extrDNATAC | 0 | 0 | 0 | |
| extrDNATACC | 0.06 | 0.00 | 0.06 | |
| extrDNATCC | 0.1 | 0.0 | 0.1 | |
| extrDNAkmer | 0 | 0 | 0 | |
| extrDrugAIO | 0 | 0 | 0 | |
| extrDrugAP | 0.20 | 0.00 | 0.21 | |
| extrDrugBCUT | 0.08 | 0.01 | 0.12 | |
| extrDrugCPSA | 0.33 | 0.05 | 0.63 | |
| extrDrugEstate | 0.29 | 0.01 | 0.58 | |
| extrDrugEstateComplete | 0.08 | 0.00 | 0.06 | |
| extrDrugExtended | 0.05 | 0.00 | 0.08 | |
| extrDrugExtendedComplete | 0.04 | 0.00 | 0.02 | |
| extrDrugGraph | 0.03 | 0.02 | 0.03 | |
| extrDrugGraphComplete | 0.03 | 0.00 | 0.01 | |
| extrDrugHybridization | 0.01 | 0.00 | 0.02 | |
| extrDrugHybridizationComplete | 0.00 | 0.02 | 0.02 | |
| extrDrugHybridizationRatio | 0.02 | 0.00 | 0.02 | |
| extrDrugIPMolecularLearning | 0.03 | 0.00 | 0.03 | |
| extrDrugKR | 2.23 | 0.00 | 2.08 | |
| extrDrugKRComplete | 2.09 | 0.00 | 2.09 | |
| extrDrugKappaShapeIndices | 0.07 | 0.03 | 0.09 | |
| extrDrugKierHallSmarts | 0.08 | 0.00 | 0.10 | |
| extrDrugMACCS | 0.09 | 0.01 | 0.11 | |
| extrDrugMACCSComplete | 0.08 | 0.00 | 0.07 | |
| extrDrugMannholdLogP | 3.12 | 0.02 | 3.05 | |
| extrDrugOBFP2 | 0.16 | 0.00 | 0.80 | |
| extrDrugOBFP3 | 0 | 0 | 0 | |
| extrDrugOBFP4 | 0.09 | 0.00 | 0.19 | |
| extrDrugPubChem | 0.41 | 0.01 | 0.40 | |
| extrDrugPubChemComplete | 0.37 | 0.00 | 0.38 | |
| extrDrugShortestPath | 0 | 0 | 0 | |
| extrDrugShortestPathComplete | 0 | 0 | 0 | |
| extrDrugStandard | 0.02 | 0.00 | 0.01 | |
| extrDrugStandardComplete | 0.01 | 0.00 | 0.02 | |
| extrDrugWHIM | 0.08 | 0.00 | 0.14 | |
| extrPCMBLOSUM | 0.08 | 0.00 | 0.14 | |
| extrPCMDescScales | 0.02 | 0.02 | 0.03 | |
| extrPCMFAScales | 0.03 | 0.00 | 0.03 | |
| extrPCMMDSScales | 0.02 | 0.00 | 0.01 | |
| extrPCMPropScales | 0.05 | 0.00 | 0.05 | |
| extrPCMScaleGap | 0.03 | 0.01 | 0.05 | |
| extrPCMScales | 0.04 | 0.00 | 0.04 | |
| extrProtAAC | 0.02 | 0.00 | 0.02 | |
| extrProtAPAAC | 1.53 | 0.02 | 1.55 | |
| extrProtCTDC | 0 | 0 | 0 | |
| extrProtCTDCClass | 0 | 0 | 0 | |
| extrProtCTDD | 0 | 0 | 0 | |
| extrProtCTDDClass | 0 | 0 | 0 | |
| extrProtCTDT | 0.01 | 0.00 | 0.02 | |
| extrProtCTDTClass | 0 | 0 | 0 | |
| extrProtCTriad | 0.11 | 0.02 | 0.12 | |
| extrProtCTriadClass | 0.11 | 0.00 | 0.11 | |
| extrProtDC | 0 | 0 | 0 | |
| extrProtFPGap | 0.03 | 0.00 | 0.03 | |
| extrProtGeary | 0.17 | 0.00 | 0.18 | |
| extrProtMoran | 0.16 | 0.00 | 0.15 | |
| extrProtMoreauBroto | 0.16 | 0.00 | 0.16 | |
| extrProtPAAC | 0.59 | 0.00 | 0.59 | |
| extrProtPSSM | 0 | 0 | 0 | |
| extrProtPSSMAcc | 0 | 0 | 0 | |
| extrProtPSSMFeature | 0 | 0 | 0 | |
| extrProtQSO | 1.01 | 0.00 | 1.01 | |
| extrProtSOCN | 0.99 | 0.00 | 0.99 | |
| extrProtTC | 0.04 | 0.04 | 0.09 | |
| geometric | 0.07 | 0.00 | 0.06 | |
| getCPI | 0.01 | 0.00 | 0.02 | |
| getDrug | 0 | 0 | 0 | |
| getProt | 0 | 0 | 0 | |
| make_kmer_index | 0 | 0 | 0 | |
| parGOSim | 0 | 0 | 0 | |
| parSeqSim | 0.67 | 0.03 | 13.30 | |
| plotStructure | 0.28 | 0.02 | 0.29 | |
| pls.cv | 0.25 | 0.00 | 0.25 | |
| property | 0.24 | 0.02 | 1.52 | |
| readFASTA | 0.01 | 0.00 | 0.01 | |
| readMolFromSDF | 0.02 | 0.00 | 0.02 | |
| readMolFromSmi | 0.02 | 0.00 | 0.02 | |
| readPDB | 1.9 | 0.0 | 1.9 | |
| revchars | 0 | 0 | 0 | |
| rf.cv | 0.8 | 0.0 | 0.8 | |
| rf.fs | 0.56 | 0.00 | 0.56 | |
| sdfbcl | 0 | 0 | 0 | |
| searchDrug | 0 | 0 | 0 | |
| segProt | 0 | 0 | 0 | |
| topology | 0.39 | 0.00 | 0.51 | |
| twoGOSim | 0 | 0 | 0 | |
| twoSeqSim | 0.75 | 0.03 | 0.78 | |
BioMedR.Rcheck/examples_x64/BioMedR-Ex.timings:
| name | user | system | elapsed | |
| AA2DACOR | 0.01 | 0.00 | 0.01 | |
| AA3DMoRSE | 0 | 0 | 0 | |
| AAACF | 0 | 0 | 0 | |
| AABLOSUM100 | 0 | 0 | 0 | |
| AABLOSUM45 | 0.02 | 0.00 | 0.02 | |
| AABLOSUM50 | 0 | 0 | 0 | |
| AABLOSUM62 | 0 | 0 | 0 | |
| AABLOSUM80 | 0 | 0 | 0 | |
| AABurden | 0 | 0 | 0 | |
| AACPSA | 0 | 0 | 0 | |
| AAConn | 0.01 | 0.00 | 0.02 | |
| AAConst | 0 | 0 | 0 | |
| AADescAll | 0.00 | 0.02 | 0.01 | |
| AAEdgeAdj | 0 | 0 | 0 | |
| AAEigIdx | 0 | 0 | 0 | |
| AAFGC | 0.02 | 0.00 | 0.02 | |
| AAGETAWAY | 0 | 0 | 0 | |
| AAGeom | 0.00 | 0.01 | 0.01 | |
| AAInfo | 0 | 0 | 0 | |
| AAMOE2D | 0.00 | 0.02 | 0.02 | |
| AAMOE3D | 0 | 0 | 0 | |
| AAMetaInfo | 0.01 | 0.00 | 0.01 | |
| AAMolProp | 0 | 0 | 0 | |
| AAPAM120 | 0 | 0 | 0 | |
| AAPAM250 | 0 | 0 | 0 | |
| AAPAM30 | 0 | 0 | 0 | |
| AAPAM40 | 0.00 | 0.01 | 0.01 | |
| AAPAM70 | 0 | 0 | 0 | |
| AARDF | 0.01 | 0.00 | 0.02 | |
| AARandic | 0 | 0 | 0 | |
| AATopo | 0 | 0 | 0 | |
| AATopoChg | 0.00 | 0.02 | 0.02 | |
| AAWHIM | 0 | 0 | 0 | |
| AAWalk | 0.00 | 0.01 | 0.01 | |
| AAindex | 0 | 0 | 0 | |
| Autocorrelation | 1.22 | 0.19 | 1.05 | |
| BMgetDNAGenBank | 0 | 0 | 0 | |
| BioMedR-package | 0 | 0 | 0 | |
| Constitutional | 0.58 | 0.04 | 0.41 | |
| NNeighbors | 1.03 | 0.02 | 1.09 | |
| OptAA3d | 0 | 0 | 0 | |
| acc | 0.01 | 0.00 | 0.02 | |
| apfp | 0 | 0 | 0 | |
| atomprop | 0 | 0 | 0 | |
| bcl | 0 | 0 | 0 | |
| calcDrugFPSim | 0 | 0 | 0 | |
| calcDrugMCSSim | 0.66 | 0.01 | 1.06 | |
| calcParProtGOSim | 0 | 0 | 0 | |
| calcParProtSeqSim | 0.27 | 0.02 | 6.97 | |
| calcTwoProtGOSim | 0 | 0 | 0 | |
| calcTwoProtSeqSim | 0.16 | 0.00 | 0.16 | |
| checkDNA | 0 | 0 | 0 | |
| checkProt | 0 | 0 | 0 | |
| clusterCMP | 1.39 | 0.01 | 1.40 | |
| clusterJP | 1.73 | 0.00 | 1.75 | |
| clusterMDS | 0.64 | 0.00 | 0.66 | |
| clusterStat | 0.35 | 0.00 | 0.34 | |
| connectivity | 2.22 | 0.07 | 0.85 | |
| convAPtoFP | 0.36 | 0.00 | 0.19 | |
| convSDFtoAP | 0.03 | 0.00 | 0.03 | |
| extrDNADAC | 0.01 | 0.00 | 0.01 | |
| extrDNADACC | 0.06 | 0.00 | 0.07 | |
| extrDNADCC | 0.10 | 0.00 | 0.09 | |
| extrDNAIncDiv | 0.17 | 0.00 | 0.17 | |
| extrDNAPseDNC | 0.02 | 0.00 | 0.02 | |
| extrDNAPseKNC | 0.01 | 0.00 | 0.01 | |
| extrDNATAC | 0.02 | 0.00 | 0.02 | |
| extrDNATACC | 0.15 | 0.00 | 0.15 | |
| extrDNATCC | 0.19 | 0.00 | 0.19 | |
| extrDNAkmer | 0 | 0 | 0 | |
| extrDrugAIO | 0 | 0 | 0 | |
| extrDrugAP | 0.29 | 0.00 | 0.29 | |
| extrDrugBCUT | 0.10 | 0.00 | 0.08 | |
| extrDrugCPSA | 0.45 | 0.04 | 0.19 | |
| extrDrugEstate | 0.48 | 0.00 | 0.21 | |
| extrDrugEstateComplete | 0.20 | 0.00 | 0.04 | |
| extrDrugExtended | 0.14 | 0.00 | 0.04 | |
| extrDrugExtendedComplete | 0.04 | 0.00 | 0.03 | |
| extrDrugGraph | 0.06 | 0.00 | 0.02 | |
| extrDrugGraphComplete | 0.03 | 0.00 | 0.03 | |
| extrDrugHybridization | 0.06 | 0.00 | 0.02 | |
| extrDrugHybridizationComplete | 0.06 | 0.00 | 0.01 | |
| extrDrugHybridizationRatio | 0.04 | 0.00 | 0.01 | |
| extrDrugIPMolecularLearning | 0.04 | 0.00 | 0.01 | |
| extrDrugKR | 7.50 | 0.10 | 1.43 | |
| extrDrugKRComplete | 0.82 | 0.03 | 0.73 | |
| extrDrugKappaShapeIndices | 0.10 | 0.00 | 0.03 | |
| extrDrugKierHallSmarts | 0.08 | 0.00 | 0.08 | |
| extrDrugMACCS | 1.04 | 0.03 | 0.16 | |
| extrDrugMACCSComplete | 0.13 | 0.00 | 0.03 | |
| extrDrugMannholdLogP | 6.06 | 0.07 | 3.53 | |
| extrDrugOBFP2 | 0.15 | 0.00 | 0.18 | |
| extrDrugOBFP3 | 0 | 0 | 0 | |
| extrDrugOBFP4 | 0.08 | 0.00 | 0.07 | |
| extrDrugPubChem | 1.17 | 0.01 | 0.22 | |
| extrDrugPubChemComplete | 0.77 | 0.02 | 0.14 | |
| extrDrugShortestPath | 0 | 0 | 0 | |
| extrDrugShortestPathComplete | 0 | 0 | 0 | |
| extrDrugStandard | 0.05 | 0.00 | 0.02 | |
| extrDrugStandardComplete | 0.08 | 0.00 | 0.01 | |
| extrDrugWHIM | 0.25 | 0.01 | 0.11 | |
| extrPCMBLOSUM | 0.17 | 0.00 | 0.13 | |
| extrPCMDescScales | 0.01 | 0.00 | 0.01 | |
| extrPCMFAScales | 0.03 | 0.00 | 0.04 | |
| extrPCMMDSScales | 0.02 | 0.00 | 0.01 | |
| extrPCMPropScales | 0.06 | 0.00 | 0.06 | |
| extrPCMScaleGap | 0.02 | 0.00 | 0.02 | |
| extrPCMScales | 0.01 | 0.02 | 0.03 | |
| extrProtAAC | 0 | 0 | 0 | |
| extrProtAPAAC | 1.16 | 0.01 | 1.17 | |
| extrProtCTDC | 0 | 0 | 0 | |
| extrProtCTDCClass | 0 | 0 | 0 | |
| extrProtCTDD | 0.00 | 0.02 | 0.02 | |
| extrProtCTDDClass | 0 | 0 | 0 | |
| extrProtCTDT | 0.02 | 0.00 | 0.01 | |
| extrProtCTDTClass | 0 | 0 | 0 | |
| extrProtCTriad | 0.10 | 0.02 | 0.13 | |
| extrProtCTriadClass | 0.1 | 0.0 | 0.1 | |
| extrProtDC | 0.01 | 0.00 | 0.01 | |
| extrProtFPGap | 0.04 | 0.00 | 0.04 | |
| extrProtGeary | 0.2 | 0.0 | 0.2 | |
| extrProtMoran | 0.22 | 0.00 | 0.22 | |
| extrProtMoreauBroto | 0.22 | 0.00 | 0.22 | |
| extrProtPAAC | 0.75 | 0.00 | 0.75 | |
| extrProtPSSM | 0 | 0 | 0 | |
| extrProtPSSMAcc | 0 | 0 | 0 | |
| extrProtPSSMFeature | 0 | 0 | 0 | |
| extrProtQSO | 1.03 | 0.00 | 1.03 | |
| extrProtSOCN | 0.92 | 0.00 | 0.92 | |
| extrProtTC | 0.05 | 0.02 | 0.07 | |
| geometric | 0.05 | 0.00 | 0.04 | |
| getCPI | 0 | 0 | 0 | |
| getDrug | 0 | 0 | 0 | |
| getProt | 0 | 0 | 0 | |
| make_kmer_index | 0 | 0 | 0 | |
| parGOSim | 0 | 0 | 0 | |
| parSeqSim | 0.67 | 0.03 | 14.64 | |
| plotStructure | 0.41 | 0.00 | 0.41 | |
| pls.cv | 0.37 | 0.00 | 0.38 | |
| property | 0.50 | 0.00 | 0.23 | |
| readFASTA | 0 | 0 | 0 | |
| readMolFromSDF | 0.10 | 0.00 | 0.02 | |
| readMolFromSmi | 0.04 | 0.00 | 0.01 | |
| readPDB | 2.39 | 0.00 | 2.30 | |
| revchars | 0 | 0 | 0 | |
| rf.cv | 1.21 | 0.00 | 1.20 | |
| rf.fs | 0.46 | 0.00 | 0.47 | |
| sdfbcl | 0 | 0 | 0 | |
| searchDrug | 0 | 0 | 0 | |
| segProt | 0 | 0 | 0 | |
| topology | 0.61 | 0.00 | 0.31 | |
| twoGOSim | 0 | 0 | 0 | |
| twoSeqSim | 0.71 | 0.01 | 0.72 | |