Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: BUILD BIN report for AMOUNTAIN on toluca2

This page was generated on 2017-04-23 14:41:52 -0400 (Sun, 23 Apr 2017).

Package 39/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AMOUNTAIN 1.1.1
Dong Li
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AMOUNTAIN
Last Changed Rev: 124307 / Revision: 129046
Last Changed Date: 2016-11-21 04:35:19 -0500 (Mon, 21 Nov 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: AMOUNTAIN
Version: 1.1.1
Command: rm -rf AMOUNTAIN.buildbin-libdir && mkdir AMOUNTAIN.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AMOUNTAIN_1.1.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AMOUNTAIN.buildbin-libdir
StartedAt: 2017-04-23 11:37:33 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 11:37:43 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 10.7 seconds
RetCode: 0
Status:  OK 
PackageFile: AMOUNTAIN_1.1.1.tgz
PackageFileSize: 606.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf AMOUNTAIN.buildbin-libdir && mkdir AMOUNTAIN.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AMOUNTAIN_1.1.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AMOUNTAIN.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=AMOUNTAIN.buildbin-libdir AMOUNTAIN_1.1.1.tar.gz'
>>>>>>> 

* installing *source* package ‘AMOUNTAIN’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -mtune=core2 -g -O2  -c AMOUNTAIN.c -o AMOUNTAIN.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o AMOUNTAIN.so AMOUNTAIN.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AMOUNTAIN)


>>>>>>> 
>>>>>>> FIXING LINKS FOR AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs//AMOUNTAIN.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs//AMOUNTAIN.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs//AMOUNTAIN.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs//AMOUNTAIN.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs//AMOUNTAIN.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs//AMOUNTAIN.so"