simpIntLists 1.8.0
Kircicegi Korkmaz
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/simpIntLists | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ WARNINGS ] | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | WARNINGS | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings simpIntLists_1.8.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/simpIntLists.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘simpIntLists/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘simpIntLists’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘simpIntLists’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findInteractionList: no visible global function definition for ‘data’
findInteractionList: no visible binding for global variable
‘ArabidopsisBioGRIDInteractionEntrezId’
findInteractionList: no visible binding for global variable
‘ArabidopsisBioGRIDInteractionOfficial’
findInteractionList: no visible binding for global variable
‘ArabidopsisBioGRIDInteractionUniqueId’
findInteractionList: no visible binding for global variable
‘C.elegansBioGRIDInteractionEntrezId’
findInteractionList: no visible binding for global variable
‘C.elegansBioGRIDInteractionOfficial’
findInteractionList: no visible binding for global variable
‘C.elegansBioGRIDInteractionUniqueId’
findInteractionList: no visible binding for global variable
‘FruitFlyBioGRIDInteractionEntrezId’
findInteractionList: no visible binding for global variable
‘FruitFlyBioGRIDInteractionOfficial’
findInteractionList: no visible binding for global variable
‘FruitFlyBioGRIDInteractionUniqueId’
findInteractionList: no visible binding for global variable
‘HumanBioGRIDInteractionEntrezId’
findInteractionList: no visible binding for global variable
‘HumanBioGRIDInteractionOfficial’
findInteractionList: no visible binding for global variable
‘HumanBioGRIDInteractionUniqueId’
findInteractionList: no visible binding for global variable
‘MouseBioGRIDInteractionEntrezId’
findInteractionList: no visible binding for global variable
‘MouseBioGRIDInteractionOfficial’
findInteractionList: no visible binding for global variable
‘MouseBioGRIDInteractionUniqueId’
findInteractionList: no visible binding for global variable
‘YeastBioGRIDInteractionEntrezId’
findInteractionList: no visible binding for global variable
‘YeastBioGRIDInteractionOfficial’
findInteractionList: no visible binding for global variable
‘YeastBioGRIDInteractionUniqueId’
findInteractionList: no visible binding for global variable
‘S.pombeBioGRIDInteractionEntrezId’
findInteractionList: no visible binding for global variable
‘S.pombeBioGRIDInteractionOfficial’
findInteractionList: no visible binding for global variable
‘S.pombeBioGRIDInteractionUniqueId’
Undefined global functions or variables:
ArabidopsisBioGRIDInteractionEntrezId
ArabidopsisBioGRIDInteractionOfficial
ArabidopsisBioGRIDInteractionUniqueId
C.elegansBioGRIDInteractionEntrezId
C.elegansBioGRIDInteractionOfficial
C.elegansBioGRIDInteractionUniqueId
FruitFlyBioGRIDInteractionEntrezId FruitFlyBioGRIDInteractionOfficial
FruitFlyBioGRIDInteractionUniqueId HumanBioGRIDInteractionEntrezId
HumanBioGRIDInteractionOfficial HumanBioGRIDInteractionUniqueId
MouseBioGRIDInteractionEntrezId MouseBioGRIDInteractionOfficial
MouseBioGRIDInteractionUniqueId S.pombeBioGRIDInteractionEntrezId
S.pombeBioGRIDInteractionOfficial S.pombeBioGRIDInteractionUniqueId
YeastBioGRIDInteractionEntrezId YeastBioGRIDInteractionOfficial
YeastBioGRIDInteractionUniqueId data
Consider adding
importFrom("utils", "data")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
ArabidopsisBioGRIDInteractionEntrezId.rda 26Kb 19Kb bzip2
ArabidopsisBioGRIDInteractionOfficial.rda 34Kb 22Kb bzip2
ArabidopsisBioGRIDInteractionUniqueId.rda 32Kb 21Kb bzip2
C.ElegansBioGRIDInteractionEntrezId.rda 44Kb 32Kb bzip2
C.ElegansBioGRIDInteractionOfficial.rda 65Kb 38Kb bzip2
C.ElegansBioGRIDInteractionUniqueId.rda 64Kb 37Kb bzip2
FruitFlyBioGRIDInteractionEntrezId.rda 165Kb 112Kb bzip2
FruitFlyBioGRIDInteractionOfficial.rda 252Kb 139Kb bzip2
FruitFlyBioGRIDInteractionUniqueId.rda 208Kb 121Kb bzip2
HumanBioGRIDInteractionEntrezId.rda 222Kb 157Kb bzip2
HumanBioGRIDInteractionOfficial.rda 318Kb 190Kb bzip2
HumanBioGRIDInteractionUniqueId.rda 29Kb 18Kb bzip2
MouseBioGRIDInteractionEntrezId.rda 25Kb 20Kb bzip2
MouseBioGRIDInteractionOfficial.rda 34Kb 23Kb bzip2
S.PombeBioGRIDInteractionEntrezId.rda 55Kb 37Kb bzip2
S.PombeBioGRIDInteractionOfficial.rda 76Kb 44Kb bzip2
S.PombeBioGRIDInteractionUniqueId.rda 89Kb 43Kb bzip2
YeastBioGRIDInteractionEntrezId.rda 685Kb 469Kb bzip2
YeastBioGRIDInteractionOfficial.rda 958Kb 572Kb bzip2
YeastBioGRIDInteractionUniqueId.rda 903Kb 533Kb bzip2
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.3-data-experiment/meat/simpIntLists.Rcheck/00check.log’
for details.