BioC experimental data: CHECK report for shinyMethylData on moscato2

Package: shinyMethylData

Version: 0.106.0

Command: rm -rf shinyMethylData.buildbin-libdir shinyMethylData.Rcheck && mkdir shinyMethylData.buildbin-libdir shinyMethylData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=shinyMethylData.buildbin-libdir shinyMethylData_0.106.0.tar.gz >shinyMethylData.Rcheck\00install.out 2>&1 && cp shinyMethylData.Rcheck\00install.out shinyMethylData-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=shinyMethylData.buildbin-libdir --install="check:shinyMethylData-install.out" --force-multiarch --no-vignettes --timings shinyMethylData_0.106.0.tar.gz

StartedAt: 2016-10-08 13:55:30 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 13:57:04 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 94.7 seconds

RetCode: 0

Status:  OK

CheckDir: shinyMethylData.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf shinyMethylData.buildbin-libdir shinyMethylData.Rcheck && mkdir shinyMethylData.buildbin-libdir shinyMethylData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=shinyMethylData.buildbin-libdir shinyMethylData_0.106.0.tar.gz >shinyMethylData.Rcheck\00install.out 2>&1 && cp shinyMethylData.Rcheck\00install.out shinyMethylData-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=shinyMethylData.buildbin-libdir --install="check:shinyMethylData-install.out" --force-multiarch --no-vignettes --timings shinyMethylData_0.106.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/shinyMethylData.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'shinyMethylData/DESCRIPTION' ... OK
* this is package 'shinyMethylData' version '0.106.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'shinyMethylData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 47.7Mb
  sub-directories of 1Mb or more:
    data  47.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'shinyMethyl'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'shinyMethyl'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/shinyMethylData.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'shinyMethylData' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'shinyMethylData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'shinyMethylData' as shinyMethylData_0.106.0.zip
* DONE (shinyMethylData)

name	user	system	elapsed
summary.tcga.norm	0.02	0.00	0.02
summary.tcga.raw	0	0	0

name	user	system	elapsed
summary.tcga.norm	0.01	0.02	0.03
summary.tcga.raw	0.02	0.00	0.01