seqc 1.5.1
Yang Liao and Wei Shi
| Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/seqc | | Last Changed Rev: 3465 / Revision: 3473 | | Last Changed Date: 2015-10-14 19:50:31 -0400 (Wed, 14 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf seqc.buildbin-libdir seqc.Rcheck && mkdir seqc.buildbin-libdir seqc.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=seqc.buildbin-libdir seqc_1.5.1.tar.gz >seqc.Rcheck\00install.out 2>&1 && cp seqc.Rcheck\00install.out seqc-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=seqc.buildbin-libdir --install="check:seqc-install.out" --force-multiarch --no-vignettes --timings seqc_1.5.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/seqc.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seqc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seqc' version '1.5.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seqc' can be installed ... OK
* checking installed package size ... NOTE
installed size is 306.9Mb
sub-directories of 1Mb or more:
data 306.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.create.SEQC.gene.eSet: no visible global function definition for
'ExpressionSet'
.create.SEQC.gene.eSet: no visible global function definition for
'pData<-'
.create.SEQC.gene.eSet: no visible global function definition for
'fData<-'
seqc.eSet: possible error in .create.SEQC.junction.eSet(platform,
center): unused argument (center)
Undefined global functions or variables:
ExpressionSet fData<- pData<-
* checking Rd files ... NOTE
prepare_Rd: seqc.samples.Rd:14-15: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'c:/biocbld/bbs-3.3-data-experiment/meat/seqc.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'seqc' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'seqc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqc' as seqc_1.5.1.zip
* DONE (seqc)