Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for miRNATarget on linux2.bioconductor.org

This page was generated on 2015-10-24 19:25:31 -0400 (Sat, 24 Oct 2015).

Package 163/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.9.0
Y-h. Taguchi
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/miRNATarget
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: miRNATarget
Version: 1.9.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.9.0.tar.gz
StartedAt: 2015-10-24 12:29:22 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:30:10 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 48.0 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.


miRNATarget.Rcheck/00install.out:

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0220.0030.026
HS_refseq_to_affy_hc_g1100.0080.0000.008
HS_refseq_to_affy_hg_focus0.0260.0040.030
HS_refseq_to_affy_hg_u133_plus_20.1110.0040.115
HS_refseq_to_affy_hg_u133a0.0600.0040.064
HS_refseq_to_affy_hg_u133a_20.0720.0010.075
HS_refseq_to_affy_hg_u133b0.0320.0000.032
HS_refseq_to_affy_hg_u95a0.0400.0000.039
HS_refseq_to_affy_hg_u95av20.0370.0000.037
HS_refseq_to_affy_hg_u95b0.0240.0000.025
HS_refseq_to_affy_hg_u95c0.0180.0000.017
HS_refseq_to_affy_hg_u95d0.010.000.01
HS_refseq_to_affy_hg_u95e0.0170.0000.017
HS_refseq_to_affy_huex_1_0_st_v21.8730.0111.885
HS_refseq_to_affy_hugene_1_0_st_v10.0830.0040.087
HS_refseq_to_affy_hugenefl0.0230.0000.023
HS_refseq_to_affy_u133_x3p0.1120.0080.120
HS_refseq_to_agilent_cgh_44b0.0180.0000.021
HS_refseq_to_agilent_wholegenome0.1150.0000.115
HS_refseq_to_canonical_transcript_stable_id0.1000.0000.101
HS_refseq_to_ccds0.0630.0000.063
HS_refseq_to_codelink0.0620.0030.066
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0030.0000.004
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0030.0000.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0030.0000.003
HS_refseq_to_embl0.8880.0040.893
HS_refseq_to_ensembl_exon_id0.0030.0000.003
HS_refseq_to_ensembl_gene_id0.0730.0030.078
HS_refseq_to_ensembl_peptide_id0.0650.0000.066
HS_refseq_to_ensembl_transcript_id0.0750.0030.080
HS_refseq_to_entrezgene0.0760.0000.077
HS_refseq_to_hgnc_id0.0690.0000.073
HS_refseq_to_hgnc_symbol0.070.000.07
HS_refseq_to_hgnc_transcript_name0.0480.0000.048
HS_refseq_to_illumina_humanht_120.0990.0000.100
HS_refseq_to_illumina_humanwg_6_v10.0410.0000.040
HS_refseq_to_illumina_humanwg_6_v20.0350.0000.036
HS_refseq_to_illumina_humanwg_6_v30.0430.0000.042
HS_refseq_to_interpro0.2060.0000.206
HS_refseq_to_ipi0.1100.0040.114
HS_refseq_to_merops0.0040.0000.004
HS_refseq_to_pdb0.2450.0040.250
HS_refseq_to_pfam0.1170.0000.118
HS_refseq_to_phalanx_onearray0.0680.0000.068
HS_refseq_to_protein_id1.2870.0161.303
HS_refseq_to_refseq_dna0.0930.0000.093
HS_refseq_to_refseq_genomic0.0020.0000.002
HS_refseq_to_refseq_peptide0.1720.0000.171
HS_refseq_to_rfam0.0040.0000.004
HS_refseq_to_rfam_gene_name0.0020.0000.002
HS_refseq_to_rfam_transcript_name0.0020.0000.002
HS_refseq_to_smart0.0640.0000.063
HS_refseq_to_tigrfam0.0050.0040.009
HS_refseq_to_ucsc0.0800.0000.079
HS_refseq_to_unigene0.1010.0000.100
HS_refseq_to_uniprot_genename0.1640.0000.163
HS_refseq_to_uniprot_genename_transcript_name0.0000.0000.002
HS_refseq_to_uniprot_sptrembl0.0010.0000.002
HS_refseq_to_uniprot_swissprot0.0010.0000.002
HS_refseq_to_uniprot_swissprot_accession0.0020.0000.001
HS_refseq_to_wikigene_id0.0000.0040.002
HS_refseq_to_wikigene_name0.0420.0000.043
MM_conv_id0.0020.0000.003
MM_refseq_to_affy_mg_u74a0.1310.0000.130
MM_refseq_to_affy_mg_u74av20.0130.0000.014
MM_refseq_to_affy_mg_u74b0.0110.0000.011
MM_refseq_to_affy_mg_u74bv20.0120.0000.012
MM_refseq_to_affy_mg_u74c0.0010.0000.004
MM_refseq_to_affy_mg_u74cv20.0060.0000.005
MM_refseq_to_affy_moe430a0.0280.0000.029
MM_refseq_to_affy_moe430b0.0140.0000.014
MM_refseq_to_affy_moex_1_0_st_v10.6350.0040.640
MM_refseq_to_affy_mogene_1_0_st_v10.0610.0040.065
MM_refseq_to_affy_mouse430_20.0730.0000.072
MM_refseq_to_affy_mouse430a_20.0510.0000.050
MM_refseq_to_affy_mu11ksuba0.0150.0000.015
MM_refseq_to_affy_mu11ksubb0.0110.0000.011
MM_refseq_to_agilent_wholegenome0.0790.0080.087
MM_refseq_to_canonical_transcript_stable_id0.0810.0000.085
MM_refseq_to_ccds0.0450.0000.044
MM_refseq_to_codelink0.0460.0000.046
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0030.0000.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0020.0000.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0030.0000.003
MM_refseq_to_embl0.4890.0040.498
MM_refseq_to_ensembl_exon_id0.0030.0000.003
MM_refseq_to_ensembl_gene_id0.0580.0000.058
MM_refseq_to_ensembl_peptide_id0.0500.0040.053
MM_refseq_to_ensembl_transcript_id0.0580.0000.057
MM_refseq_to_entrezgene0.0520.0000.052
MM_refseq_to_fantom0.1190.0000.119
MM_refseq_to_illumina_mousewg_6_v10.0410.0000.041
MM_refseq_to_illumina_mousewg_6_v20.1180.0000.117
MM_refseq_to_interpro0.0920.0000.092
MM_refseq_to_ipi0.0010.0000.002
MM_refseq_to_merops0.0030.0000.004
MM_refseq_to_mgi_id0.0280.0040.032
MM_refseq_to_mgi_symbol0.0330.0000.032
MM_refseq_to_mgi_transcript_name0.0340.0000.034
MM_refseq_to_pdb0.0090.0000.009
MM_refseq_to_pfam0.0520.0000.053
MM_refseq_to_phalanx_onearray0.0310.0000.030
MM_refseq_to_protein_id0.2470.0000.247
MM_refseq_to_refseq_dna0.0430.0000.043
MM_refseq_to_refseq_peptide0.1280.0000.129
MM_refseq_to_rfam0.0020.0000.002
MM_refseq_to_rfam_gene_name0.0010.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0250.0000.026
MM_refseq_to_tigrfam0.0040.0000.004
MM_refseq_to_ucsc0.0350.0000.034
MM_refseq_to_unigene0.0450.0000.045
MM_refseq_to_uniprot_genename0.0310.0000.032
MM_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
MM_refseq_to_uniprot_sptrembl0.0020.0000.002
MM_refseq_to_uniprot_swissprot0.0020.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0010.0000.002
MM_refseq_to_wikigene_id0.0020.0000.001
MM_refseq_to_wikigene_name0.0310.0000.032
TBL21.1510.0441.199
TBL2_HS1.4040.0561.460
TBL2_MM0.7510.0520.805
conv_id0.0030.0000.002
id_conv0.030.000.03