BioC experimental data: CHECK report for ind1KG on zin2

Package: ind1KG

Version: 0.9.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ind1KG_0.9.0.tar.gz

StartedAt: 2016-04-16 09:41:05 -0700 (Sat, 16 Apr 2016)

EndedAt: 2016-04-16 09:42:12 -0700 (Sat, 16 Apr 2016)

EllapsedTime: 67.0 seconds

RetCode: 0

Status:  OK

CheckDir: ind1KG.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ind1KG_0.9.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ind1KG.Rcheck’
* using R version 3.3.0 beta (2016-04-06 r70434)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ind1KG/DESCRIPTION’ ... OK
* this is package ‘ind1KG’ version ‘0.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ind1KG’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
  installed size is 181.5Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [16s/16s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
n240 9.322  0.084   9.399
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ind1KG.Rcheck/00check.log’
for details.

* installing *source* package ‘ind1KG’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ind1KG)

name	user	system	elapsed
c6snp	3.156	0.032	3.185
gw6c6.snp240	0.119	0.004	0.123
n240	9.322	0.084	9.399
oregdf	0.003	0.000	0.004
pup240_500k	2.114	0.020	2.144
pup240_disc	0.053	0.000	0.053
rsgdf	0.005	0.000	0.004
yri240_6	0.317	0.008	0.325