BioC experimental data: CHECK report for gageData on linux2.bioconductor.org

Package: gageData

Version: 2.9.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings gageData_2.9.0.tar.gz

StartedAt: 2015-10-24 12:13:24 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:14:00 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 36.0 seconds

RetCode: 0

Status:  OK

CheckDir: gageData.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings gageData_2.9.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/gageData.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gageData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gageData’ version ‘2.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gageData’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 10.8Mb
  sub-directories of 1Mb or more:
    data  10.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [21s/21s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
hnrnp.cnts 12.055  0.036  12.101
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/gageData.Rcheck/00check.log’
for details.

* installing *source* package ‘gageData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (gageData)

name	user	system	elapsed
bmp6	4.365	0.047	4.458
genesets	3.905	0.016	3.940
gse16873.full	0.661	0.020	0.686
hnrnp.cnts	12.055	0.036	12.101
sc.gene	0.049	0.000	0.048