BioC experimental data: CHECK report for frmaExampleData on morelia

Package: frmaExampleData

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings frmaExampleData_1.7.0.tar.gz

StartedAt: 2015-11-25 10:34:44 -0800 (Wed, 25 Nov 2015)

EndedAt: 2015-11-25 10:38:02 -0800 (Wed, 25 Nov 2015)

EllapsedTime: 198.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: frmaExampleData.Rcheck

Warnings: 1

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings frmaExampleData_1.7.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/frmaExampleData.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘frmaExampleData/DESCRIPTION’ ... OK
* this is package ‘frmaExampleData’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘frmaExampleData’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 22.8Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                        old_size new_size compress
  AffyBatch133a.rda       10.8Mb    6.9Mb       xz
  AffyBatch133atag.rda     2.2Mb    817Kb       xz
  AffyBatch133plus2.rda    5.4Mb    1.9Mb       xz
  AffyBatchExample.rda     4.3Mb    2.3Mb       xz
* checking examples ... [4s/4s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/frmaExampleData.Rcheck/00check.log’
for details.

* installing *source* package ‘frmaExampleData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (frmaExampleData)

name	user	system	elapsed
AffyBatch133a	0.824	0.042	0.876
AffyBatch133atag	0.382	0.004	0.392
AffyBatch133plus2	1.620	0.049	2.073
AffyBatchExample	0.349	0.009	0.362