BioC experimental data: CHECK report for facopy.annot on morelia
This page was generated on 2015-11-25 16:26:40 -0800 (Wed, 25 Nov 2015).
facopy.annot 0.105.0 David Mosen-Ansorena
Snapshot Date: 2015-11-25 07:17:28 -0800 (Wed, 25 Nov 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/facopy.annot | Last Changed Rev: 3462 / Revision: 3504 | Last Changed Date: 2015-10-13 13:20:35 -0700 (Tue, 13 Oct 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
Summary
Package: facopy.annot |
Version: 0.105.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings facopy.annot_0.105.0.tar.gz |
StartedAt: 2015-11-25 10:31:31 -0800 (Wed, 25 Nov 2015) |
EndedAt: 2015-11-25 10:33:11 -0800 (Wed, 25 Nov 2015) |
EllapsedTime: 100.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: facopy.annot.Rcheck |
Warnings: 0 |
Command output
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings facopy.annot_0.105.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/facopy.annot.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.105.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... [2s/18s] OK
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/17s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.3-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.
facopy.annot.Rcheck/00install.out:
* installing *source* package ‘facopy.annot’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (facopy.annot)
facopy.annot.Rcheck/facopy.annot-Ex.timings:
name | user | system | elapsed
|
hg18_armLimits | 0.021 | 0.002 | 0.321 |
|
hg18_db_gsk_bladder | 0.013 | 0.001 | 0.132 |
|
hg18_db_gsk_blood | 0.016 | 0.000 | 0.017 |
|
hg18_db_gsk_bone | 0.012 | 0.000 | 0.011 |
|
hg18_db_gsk_brain | 0.017 | 0.001 | 0.018 |
|
hg18_db_gsk_breast | 0.017 | 0.001 | 0.017 |
|
hg18_db_gsk_cervix | 0.015 | 0.000 | 0.072 |
|
hg18_db_gsk_cns | 0.024 | 0.000 | 0.026 |
|
hg18_db_gsk_colon | 0.013 | 0.001 | 0.180 |
|
hg18_db_gsk_connective_tissue | 0.013 | 0.001 | 0.014 |
|
hg18_db_gsk_esophagus | 0.016 | 0.000 | 0.016 |
|
hg18_db_gsk_eye | 0.004 | 0.001 | 0.004 |
|
hg18_db_gsk_kidney | 0.011 | 0.000 | 0.012 |
|
hg18_db_gsk_liver | 0.019 | 0.001 | 0.020 |
|
hg18_db_gsk_lung | 0.018 | 0.000 | 0.018 |
|
hg18_db_gsk_muscle | 0.014 | 0.000 | 0.014 |
|
hg18_db_gsk_ovary | 0.015 | 0.000 | 0.015 |
|
hg18_db_gsk_pancreas | 0.014 | 0.001 | 0.015 |
|
hg18_db_gsk_pharynx | 0.016 | 0.000 | 0.016 |
|
hg18_db_gsk_placenta | 0.017 | 0.000 | 0.020 |
|
hg18_db_gsk_prostate | 0.019 | 0.001 | 0.020 |
|
hg18_db_gsk_rectum | 0.015 | 0.000 | 0.016 |
|
hg18_db_gsk_sarcoma | 0.010 | 0.000 | 0.012 |
|
hg18_db_gsk_stomach | 0.018 | 0.001 | 0.023 |
|
hg18_db_gsk_synovium | 0.005 | 0.000 | 0.006 |
|
hg18_db_gsk_thyroid | 0.020 | 0.001 | 0.020 |
|
hg18_db_gsk_uterus | 0.018 | 0.000 | 0.019 |
|
hg18_db_nci60 | 0.025 | 0.000 | 0.026 |
|
hg18_db_tcga_blca | 0.028 | 0.001 | 0.029 |
|
hg18_db_tcga_brca | 0.027 | 0.000 | 0.027 |
|
hg18_db_tcga_cesc | 0.048 | 0.000 | 0.049 |
|
hg18_db_tcga_coad | 0.018 | 0.000 | 0.019 |
|
hg18_db_tcga_gbm | 0.029 | 0.000 | 0.030 |
|
hg18_db_tcga_hnsc | 0.023 | 0.001 | 0.198 |
|
hg18_db_tcga_kirc | 0.028 | 0.000 | 0.038 |
|
hg18_db_tcga_kirp | 0.030 | 0.000 | 0.031 |
|
hg18_db_tcga_lgg | 0.014 | 0.000 | 0.015 |
|
hg18_db_tcga_lihc | 0.017 | 0.001 | 0.017 |
|
hg18_db_tcga_luad | 0.016 | 0.001 | 0.017 |
|
hg18_db_tcga_lusc | 0.024 | 0.000 | 0.024 |
|
hg18_db_tcga_ov | 0.018 | 0.001 | 0.018 |
|
hg18_db_tcga_prad | 0.021 | 0.000 | 0.021 |
|
hg18_db_tcga_read | 0.017 | 0.001 | 0.017 |
|
hg18_db_tcga_stad | 0.017 | 0.000 | 0.017 |
|
hg18_db_tcga_thca | 0.014 | 0.000 | 0.014 |
|
hg18_db_tcga_ucec | 0.017 | 0.000 | 0.017 |
|
hg18_feature_cancergene | 0.004 | 0.000 | 0.005 |
|
hg18_feature_ensembl | 0.149 | 0.003 | 0.153 |
|
hg18_feature_lincRNA | 0.015 | 0.001 | 0.015 |
|
hg18_feature_mirnas | 0.005 | 0.000 | 0.005 |
|
hg18_feature_oncogene | 0.003 | 0.001 | 0.003 |
|
hg18_feature_tumorsupressor | 0.003 | 0.000 | 0.004 |
|
hg19_armLimits | 0.003 | 0.001 | 0.003 |
|
hg19_db_gsk_bladder | 0.014 | 0.000 | 0.014 |
|
hg19_db_gsk_blood | 0.025 | 0.001 | 0.024 |
|
hg19_db_gsk_bone | 0.015 | 0.000 | 0.015 |
|
hg19_db_gsk_brain | 0.011 | 0.000 | 0.012 |
|
hg19_db_gsk_breast | 0.023 | 0.000 | 0.024 |
|
hg19_db_gsk_cervix | 0.019 | 0.001 | 0.020 |
|
hg19_db_gsk_cns | 0.021 | 0.000 | 0.022 |
|
hg19_db_gsk_colon | 0.014 | 0.000 | 0.015 |
|
hg19_db_gsk_connective_tissue | 0.012 | 0.000 | 0.012 |
|
hg19_db_gsk_esophagus | 0.011 | 0.000 | 0.013 |
|
hg19_db_gsk_eye | 0.004 | 0.000 | 0.004 |
|
hg19_db_gsk_kidney | 0.012 | 0.000 | 0.013 |
|
hg19_db_gsk_liver | 0.017 | 0.000 | 0.018 |
|
hg19_db_gsk_lung | 0.028 | 0.001 | 0.028 |
|
hg19_db_gsk_muscle | 0.009 | 0.000 | 0.009 |
|
hg19_db_gsk_ovary | 0.013 | 0.001 | 0.014 |
|
hg19_db_gsk_pancreas | 0.012 | 0.000 | 0.011 |
|
hg19_db_gsk_pharynx | 0.015 | 0.000 | 0.015 |
|
hg19_db_gsk_placenta | 0.013 | 0.000 | 0.014 |
|
hg19_db_gsk_prostate | 0.011 | 0.000 | 0.012 |
|
hg19_db_gsk_rectum | 0.012 | 0.000 | 0.011 |
|
hg19_db_gsk_sarcoma | 0.007 | 0.000 | 0.007 |
|
hg19_db_gsk_stomach | 0.012 | 0.000 | 0.012 |
|
hg19_db_gsk_synovium | 0.002 | 0.001 | 0.002 |
|
hg19_db_gsk_thyroid | 0.019 | 0.000 | 0.024 |
|
hg19_db_gsk_uterus | 0.019 | 0.001 | 0.020 |
|
hg19_db_nci60 | 0.032 | 0.001 | 0.037 |
|
hg19_db_tcga_blca | 0.032 | 0.001 | 0.036 |
|
hg19_db_tcga_brca | 0.017 | 0.000 | 0.017 |
|
hg19_db_tcga_cesc | 0.035 | 0.001 | 0.036 |
|
hg19_db_tcga_coad | 0.028 | 0.000 | 0.030 |
|
hg19_db_tcga_gbm | 0.023 | 0.000 | 0.024 |
|
hg19_db_tcga_hnsc | 0.023 | 0.001 | 0.024 |
|
hg19_db_tcga_kirc | 0.017 | 0.000 | 0.017 |
|
hg19_db_tcga_kirp | 0.032 | 0.001 | 0.038 |
|
hg19_db_tcga_lgg | 0.028 | 0.001 | 0.034 |
|
hg19_db_tcga_lihc | 0.030 | 0.001 | 0.033 |
|
hg19_db_tcga_luad | 0.033 | 0.000 | 0.038 |
|
hg19_db_tcga_lusc | 0.030 | 0.000 | 0.038 |
|
hg19_db_tcga_ov | 0.033 | 0.001 | 0.037 |
|
hg19_db_tcga_prad | 0.026 | 0.000 | 0.028 |
|
hg19_db_tcga_read | 0.033 | 0.001 | 0.040 |
|
hg19_db_tcga_stad | 0.026 | 0.000 | 0.034 |
|
hg19_db_tcga_thca | 0.025 | 0.000 | 0.025 |
|
hg19_db_tcga_ucec | 0.025 | 0.001 | 0.026 |
|
hg19_feature_cancergene | 0.005 | 0.000 | 0.005 |
|
hg19_feature_ensembl | 0.268 | 0.004 | 0.311 |
|
hg19_feature_lincRNA | 0.023 | 0.000 | 0.024 |
|
hg19_feature_mirnas | 0.025 | 0.001 | 0.025 |
|
hg19_feature_oncogene | 0.003 | 0.000 | 0.003 |
|
hg19_feature_tumorsupressor | 0.004 | 0.000 | 0.004 |
|
mm8_armLimits | 0.002 | 0.000 | 0.002 |
|
mm8_feature_ensembl | 0.293 | 0.002 | 0.296 |
|
mm8_feature_mirnas | 0.009 | 0.001 | 0.010 |
|