faahKO 1.12.0
Colin A. Smith
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/faahKO | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf faahKO.buildbin-libdir faahKO.Rcheck && mkdir faahKO.buildbin-libdir faahKO.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=faahKO.buildbin-libdir faahKO_1.12.0.tar.gz >faahKO.Rcheck\00install.out 2>&1 && cp faahKO.Rcheck\00install.out faahKO-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=faahKO.buildbin-libdir --install="check:faahKO-install.out" --force-multiarch --no-vignettes --timings faahKO_1.12.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/faahKO.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'faahKO/DESCRIPTION' ... OK
* this is package 'faahKO' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following file with a non-portable file name:
inst/s_Proteomic profiling of yeast TFs.txt
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'faahKO' can be installed ... OK
* checking installed package size ... NOTE
installed size is 42.7Mb
sub-directories of 1Mb or more:
cdf 42.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'xcms' which was already attached by Depends.
Please remove these calls from your code.
Package in Depends field not imported from: 'xcms'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'faahKO/R/zzz.R':
.onLoad calls:
require(xcms)
Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
.onLoad: warning in assign("faahko", faahko, env =
getNamespace("faahKO")): partial argument match of 'env' to 'envir'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
'E:/biocbld/bbs-3.3-data-experiment/meat/faahKO.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'faahKO' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'faahKO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'faahKO' as faahKO_1.12.0.zip
* DONE (faahKO)