cheung2010 0.10.0
Vince Carey
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/cheung2010 | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf cheung2010.buildbin-libdir cheung2010.Rcheck && mkdir cheung2010.buildbin-libdir cheung2010.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cheung2010.buildbin-libdir cheung2010_0.10.0.tar.gz >cheung2010.Rcheck\00install.out 2>&1 && cp cheung2010.Rcheck\00install.out cheung2010-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=cheung2010.buildbin-libdir --install="check:cheung2010-install.out" --force-multiarch --no-vignettes --timings cheung2010_0.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/cheung2010.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cheung2010/DESCRIPTION' ... OK
* this is package 'cheung2010' version '0.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cheung2010' can be installed ... OK
* checking installed package size ... NOTE
installed size is 54.3Mb
sub-directories of 1Mb or more:
data 14.0Mb
parts 30.9Mb
rmaexprs 9.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'AnnotationDbi'
All declared Imports should be used.
Packages in Depends field not imported from:
'GGtools' 'GenomicRanges' 'hgfocus.db'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'cheung2010/R/zzz.R':
.onLoad calls:
packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"", pkgname, "\", [chrvec])", sep = ""), "\n", "available chromosomes are named ", selectSome(cn), "\n")
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
cheung2010locs 4.52 0.06 8.92
* checking for unstated dependencies in vignettes ... NOTE
'::' or ':::' import not declared from: 'snpStats'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 5 NOTEs
See
'E:/biocbld/bbs-3.3-data-experiment/meat/cheung2010.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'cheung2010' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'cheung2010' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cheung2010' as cheung2010_0.10.0.zip
* DONE (cheung2010)