BioC experimental data: CHECK report for ceuhm3 on moscato2

Package: ceuhm3

Version: 0.10.0

Command: rm -rf ceuhm3.buildbin-libdir ceuhm3.Rcheck && mkdir ceuhm3.buildbin-libdir ceuhm3.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ceuhm3.buildbin-libdir ceuhm3_0.10.0.tar.gz >ceuhm3.Rcheck\00install.out 2>&1 && cp ceuhm3.Rcheck\00install.out ceuhm3-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=ceuhm3.buildbin-libdir --install="check:ceuhm3-install.out" --force-multiarch --no-vignettes --timings ceuhm3_0.10.0.tar.gz

StartedAt: 2016-10-08 11:08:04 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 11:23:29 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 924.3 seconds

RetCode: 0

Status:  OK

CheckDir: ceuhm3.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ceuhm3.buildbin-libdir ceuhm3.Rcheck && mkdir ceuhm3.buildbin-libdir ceuhm3.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ceuhm3.buildbin-libdir ceuhm3_0.10.0.tar.gz >ceuhm3.Rcheck\00install.out 2>&1 && cp ceuhm3.Rcheck\00install.out ceuhm3-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=ceuhm3.buildbin-libdir --install="check:ceuhm3-install.out" --force-multiarch --no-vignettes --timings ceuhm3_0.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/ceuhm3.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ceuhm3/DESCRIPTION' ... OK
* this is package 'ceuhm3' version '0.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ceuhm3' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 45.1Mb
  sub-directories of 1Mb or more:
    data   25.9Mb
    parts  19.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'GGtools'
  All declared Imports should be used.
Package in Depends field not imported from: 'GGBase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'ceuhm3/R/zzz.R':
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""))
    packageStartupMessage("available chromosomes are named ", selectSome(cn))

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
ceuhm3-package 10.61   0.84  459.91
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
ceuhm3-package 11.62   0.39    13.4
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/ceuhm3.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'ceuhm3' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'ceuhm3' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ceuhm3' as ceuhm3_0.10.0.zip
* DONE (ceuhm3)

name	user	system	elapsed
ceuhm3-package	10.61	0.84	459.91

name	user	system	elapsed
ceuhm3-package	11.62	0.39	13.40