SpikeInSubset 1.12.0
Rafael A. Irizarry
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/SpikeInSubset | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf SpikeInSubset.buildbin-libdir SpikeInSubset.Rcheck && mkdir SpikeInSubset.buildbin-libdir SpikeInSubset.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SpikeInSubset.buildbin-libdir SpikeInSubset_1.12.0.tar.gz >SpikeInSubset.Rcheck\00install.out 2>&1 && cp SpikeInSubset.Rcheck\00install.out SpikeInSubset-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=SpikeInSubset.buildbin-libdir --install="check:SpikeInSubset-install.out" --force-multiarch --no-vignettes --timings SpikeInSubset_1.12.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/SpikeInSubset.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SpikeInSubset/DESCRIPTION' ... OK
* this is package 'SpikeInSubset' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpikeInSubset' can be installed ... WARNING
Found the following significant warnings:
Warning: E:/biocbld/bbs-3.3-data-experiment/tmpdir/RtmpAH2wSr/R.INSTALL8e069846a74/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
See 'E:/biocbld/bbs-3.3-data-experiment/meat/SpikeInSubset.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 20.5Mb
sub-directories of 1Mb or more:
data 20.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'Biobase' 'affy'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: xhyb.Rd: docType 'instance' is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
hgu133a.spikein.xhyb.rda 12Kb 2Kb gzip
mas133.rda 2.2Mb 1015Kb xz
mas95.rda 1.3Mb 571Kb xz
rma133.rda 2.2Mb 898Kb xz
rma95.rda 1.3Mb 522Kb xz
spikein133.rda 7.3Mb 4.4Mb xz
spikein95.rda 6.1Mb 3.6Mb xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 3 NOTEs
See
'E:/biocbld/bbs-3.3-data-experiment/meat/SpikeInSubset.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'SpikeInSubset' ...
** R
** data
** preparing package for lazy loading
** help
Warning: E:/biocbld/bbs-3.3-data-experiment/tmpdir/RtmpAH2wSr/R.INSTALL8e069846a74/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'SpikeInSubset' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SpikeInSubset' as SpikeInSubset_1.12.0.zip
* DONE (SpikeInSubset)