BioC experimental data: CHECK report for QDNAseq.mm10 on windows2.bioconductor.org
This page was generated on 2015-10-24 19:26:02 -0400 (Sat, 24 Oct 2015).
QDNAseq.mm10 1.1.0 Daoud Sie
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/QDNAseq.mm10 | Last Changed Rev: 3462 / Revision: 3473 | Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | | |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
Package: QDNAseq.mm10
|
Version: 1.1.0
|
Command: rm -rf QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && mkdir QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=QDNAseq.mm10.buildbin-libdir QDNAseq.mm10_1.1.0.tar.gz >QDNAseq.mm10.Rcheck\00install.out 2>&1 && cp QDNAseq.mm10.Rcheck\00install.out QDNAseq.mm10-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=QDNAseq.mm10.buildbin-libdir --install="check:QDNAseq.mm10-install.out" --force-multiarch --no-vignettes --timings QDNAseq.mm10_1.1.0.tar.gz
|
StartedAt: 2015-10-24 12:49:35 -0400 (Sat, 24 Oct 2015)
|
EndedAt: 2015-10-24 12:52:56 -0400 (Sat, 24 Oct 2015)
|
EllapsedTime: 200.4 seconds
|
RetCode: 0
|
Status: OK
|
CheckDir: QDNAseq.mm10.Rcheck
|
Warnings: 0
|
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && mkdir QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=QDNAseq.mm10.buildbin-libdir QDNAseq.mm10_1.1.0.tar.gz >QDNAseq.mm10.Rcheck\00install.out 2>&1 && cp QDNAseq.mm10.Rcheck\00install.out QDNAseq.mm10-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=QDNAseq.mm10.buildbin-libdir --install="check:QDNAseq.mm10-install.out" --force-multiarch --no-vignettes --timings QDNAseq.mm10_1.1.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/QDNAseq.mm10.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'QDNAseq.mm10/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'QDNAseq.mm10' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'QDNAseq.mm10' can be installed ... OK
* checking installed package size ... NOTE
installed size is 31.3Mb
sub-directories of 1Mb or more:
data 31.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [31s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
mm10.1kbp.SR50 17.44 0.26 17.7
** running examples for arch 'x64' ... [31s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
mm10.1kbp.SR50 17.05 0.28 17.33
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'c:/biocbld/bbs-3.3-data-experiment/meat/QDNAseq.mm10.Rcheck/00check.log'
for details.
QDNAseq.mm10.Rcheck/00install.out:
install for i386
* installing *source* package 'QDNAseq.mm10' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'QDNAseq.mm10' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QDNAseq.mm10' as QDNAseq.mm10_1.1.0.zip
* DONE (QDNAseq.mm10)
QDNAseq.mm10.Rcheck/examples_i386/QDNAseq.mm10-Ex.timings:
name | user | system | elapsed
|
QDNAseq.mm10-package | 0.80 | 0.04 | 0.84 |
|
mm10.1000kbp.SR50 | 0.09 | 0.02 | 0.11 |
|
mm10.100kbp.SR50 | 0.28 | 0.03 | 0.31 |
|
mm10.10kbp.SR50 | 2.16 | 0.11 | 2.27 |
|
mm10.15kbp.SR50 | 1.14 | 0.05 | 1.19 |
|
mm10.1kbp.SR50 | 17.44 | 0.26 | 17.70 |
|
mm10.30kbp.SR50 | 0.48 | 0.05 | 0.53 |
|
mm10.500kbp.SR50 | 0.10 | 0.00 | 0.09 |
|
mm10.50kbp.SR50 | 0.28 | 0.08 | 0.36 |
|
mm10.5kbp.SR50 | 3.70 | 0.09 | 3.80 |
|
QDNAseq.mm10.Rcheck/examples_x64/QDNAseq.mm10-Ex.timings:
name | user | system | elapsed
|
QDNAseq.mm10-package | 0.78 | 0.08 | 0.86 |
|
mm10.1000kbp.SR50 | 0.02 | 0.05 | 0.06 |
|
mm10.100kbp.SR50 | 0.14 | 0.03 | 0.17 |
|
mm10.10kbp.SR50 | 2.20 | 0.03 | 2.24 |
|
mm10.15kbp.SR50 | 0.97 | 0.09 | 1.06 |
|
mm10.1kbp.SR50 | 17.05 | 0.28 | 17.33 |
|
mm10.30kbp.SR50 | 0.56 | 0.03 | 0.59 |
|
mm10.500kbp.SR50 | 0.04 | 0.05 | 0.09 |
|
mm10.50kbp.SR50 | 0.27 | 0.03 | 0.30 |
|
mm10.5kbp.SR50 | 3.87 | 0.13 | 4.00 |
|