QDNAseq.hg19 1.2.0
Daoud Sie
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/QDNAseq.hg19 | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf QDNAseq.hg19.buildbin-libdir QDNAseq.hg19.Rcheck && mkdir QDNAseq.hg19.buildbin-libdir QDNAseq.hg19.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=QDNAseq.hg19.buildbin-libdir QDNAseq.hg19_1.2.0.tar.gz >QDNAseq.hg19.Rcheck\00install.out 2>&1 && cp QDNAseq.hg19.Rcheck\00install.out QDNAseq.hg19-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=QDNAseq.hg19.buildbin-libdir --install="check:QDNAseq.hg19-install.out" --force-multiarch --no-vignettes --timings QDNAseq.hg19_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/QDNAseq.hg19.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'QDNAseq.hg19/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'QDNAseq.hg19' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'QDNAseq.hg19' can be installed ... OK
* checking installed package size ... NOTE
installed size is 35.4Mb
sub-directories of 1Mb or more:
data 35.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
hg19.1kbp.SR50 29.20 0.39 29.59
QDNAseq.hg19-package 1.54 0.14 51.48
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
hg19.1kbp.SR50 23.74 0.55 24.29
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.3-data-experiment/meat/QDNAseq.hg19.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'QDNAseq.hg19' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'QDNAseq.hg19' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QDNAseq.hg19' as QDNAseq.hg19_1.2.0.zip
* DONE (QDNAseq.hg19)