BioC experimental data: CHECK report for NCIgraphData on linux2.bioconductor.org
This page was generated on 2015-10-24 19:25:29 -0400 (Sat, 24 Oct 2015).
NCIgraphData 1.7.0 Laurent Jacob
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/NCIgraphData | Last Changed Rev: 3462 / Revision: 3473 | Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ WARNINGS ] | |  |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | WARNINGS | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | WARNINGS | OK | |
Summary
Package: NCIgraphData |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings NCIgraphData_1.7.0.tar.gz |
StartedAt: 2015-10-24 12:31:15 -0400 (Sat, 24 Oct 2015) |
EndedAt: 2015-10-24 12:32:45 -0400 (Sat, 24 Oct 2015) |
EllapsedTime: 89.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: NCIgraphData.Rcheck |
Warnings: 1 |
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings NCIgraphData_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/NCIgraphData.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘NCIgraphData/DESCRIPTION’ ... OK
* this is package ‘NCIgraphData’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NCIgraphData’ can be installed ... [7s/7s] OK
* checking installed package size ... NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 5.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
NCI-cyList.RData 4.3Mb 2.0Mb xz
reactome-cyList.RData 1.1Mb 558Kb xz
* checking examples ... [4s/4s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.3-data-experiment/meat/NCIgraphData.Rcheck/00check.log’
for details.
NCIgraphData.Rcheck/00install.out:
* installing *source* package ‘NCIgraphData’ ...
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (NCIgraphData)
NCIgraphData.Rcheck/NCIgraphData-Ex.timings:
name | user | system | elapsed
|
NCI.cyList | 3.219 | 0.136 | 3.376 |
|
reactome.cyList | 0.742 | 0.024 | 0.765 |
|