BioC experimental data: CHECK report for MethylAidData on morelia
This page was generated on 2015-11-25 16:26:42 -0800 (Wed, 25 Nov 2015).
MethylAidData 1.3.0 M. van Iterson
Snapshot Date: 2015-11-25 07:17:28 -0800 (Wed, 25 Nov 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/MethylAidData | Last Changed Rev: 3462 / Revision: 3504 | Last Changed Date: 2015-10-13 13:20:35 -0700 (Tue, 13 Oct 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
Summary
Package: MethylAidData |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MethylAidData_1.3.0.tar.gz |
StartedAt: 2015-11-25 10:53:20 -0800 (Wed, 25 Nov 2015) |
EndedAt: 2015-11-25 10:55:16 -0800 (Wed, 25 Nov 2015) |
EllapsedTime: 116.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MethylAidData.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MethylAidData_1.3.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/MethylAidData.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MethylAidData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MethylAidData’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MethylAidData’ can be installed ... [10s/12s] OK
* checking installed package size ... NOTE
installed size is 11.6Mb
sub-directories of 1Mb or more:
data 11.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [17s/20s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
exampleDataLarge 7.303 0.162 8.75
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.3-data-experiment/meat/MethylAidData.Rcheck/00check.log’
for details.
MethylAidData.Rcheck/00install.out:
* installing *source* package ‘MethylAidData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : Error in 'rgl_init'
* DONE (MethylAidData)
MethylAidData.Rcheck/MethylAidData-Ex.timings:
name | user | system | elapsed
|
exampleDataLarge | 7.303 | 0.162 | 8.750 |
|