BioC experimental data: CHECK report for MUGAExampleData on windows2.bioconductor.org

Package: MUGAExampleData

Version: 0.105.0

Command: rm -rf MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && mkdir MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MUGAExampleData.buildbin-libdir MUGAExampleData_0.105.0.tar.gz >MUGAExampleData.Rcheck\00install.out 2>&1 && cp MUGAExampleData.Rcheck\00install.out MUGAExampleData-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MUGAExampleData.buildbin-libdir --install="check:MUGAExampleData-install.out" --force-multiarch --no-vignettes --timings MUGAExampleData_0.105.0.tar.gz

StartedAt: 2015-10-24 12:41:24 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:42:21 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 57.3 seconds

RetCode: 0

Status:  OK

CheckDir: MUGAExampleData.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && mkdir MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MUGAExampleData.buildbin-libdir MUGAExampleData_0.105.0.tar.gz >MUGAExampleData.Rcheck\00install.out 2>&1 && cp MUGAExampleData.Rcheck\00install.out MUGAExampleData-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MUGAExampleData.buildbin-libdir --install="check:MUGAExampleData-install.out" --force-multiarch --no-vignettes --timings MUGAExampleData_0.105.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/MUGAExampleData.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MUGAExampleData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MUGAExampleData' version '0.105.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MUGAExampleData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 88.7Mb
  sub-directories of 1Mb or more:
    data  88.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/MUGAExampleData.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'MUGAExampleData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MUGAExampleData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MUGAExampleData' as MUGAExampleData_0.105.0.zip
* DONE (MUGAExampleData)

name	user	system	elapsed
FinalReport1	3.80	0.11	3.90
FinalReport2	1.33	0.02	1.34
MUGAExampleData-package	3.14	0.03	3.19
Samples1	0	0	0
Samples2	0	0	0
call.rate.batch	0.02	0.00	0.02
geno	0.86	0.01	0.87
model.probs	0.79	0.03	0.83
pheno	0.02	0.00	0.01
x	0.09	0.00	0.10
y	0.10	0.00	0.09

name	user	system	elapsed
FinalReport1	3.37	0.03	3.41
FinalReport2	1.35	0.00	1.34
MUGAExampleData-package	2.85	0.03	2.87
Samples1	0	0	0
Samples2	0	0	0
call.rate.batch	0	0	0
geno	1.14	0.03	1.17
model.probs	0.78	0.00	0.78
pheno	0.02	0.00	0.02
x	0.09	0.01	0.11
y	0.08	0.00	0.08