BioC experimental data: CHECK report for MUGAExampleData on moscato2

Package: MUGAExampleData

Version: 0.106.0

Command: rm -rf MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && mkdir MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MUGAExampleData.buildbin-libdir MUGAExampleData_0.106.0.tar.gz >MUGAExampleData.Rcheck\00install.out 2>&1 && cp MUGAExampleData.Rcheck\00install.out MUGAExampleData-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MUGAExampleData.buildbin-libdir --install="check:MUGAExampleData-install.out" --force-multiarch --no-vignettes --timings MUGAExampleData_0.106.0.tar.gz

StartedAt: 2016-10-08 13:04:55 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 13:07:26 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 151.3 seconds

RetCode: 0

Status:  OK

CheckDir: MUGAExampleData.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && mkdir MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MUGAExampleData.buildbin-libdir MUGAExampleData_0.106.0.tar.gz >MUGAExampleData.Rcheck\00install.out 2>&1 && cp MUGAExampleData.Rcheck\00install.out MUGAExampleData-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MUGAExampleData.buildbin-libdir --install="check:MUGAExampleData-install.out" --force-multiarch --no-vignettes --timings MUGAExampleData_0.106.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/MUGAExampleData.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MUGAExampleData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MUGAExampleData' version '0.106.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MUGAExampleData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 88.7Mb
  sub-directories of 1Mb or more:
    data  88.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/MUGAExampleData.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'MUGAExampleData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MUGAExampleData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MUGAExampleData' as MUGAExampleData_0.106.0.zip
* DONE (MUGAExampleData)

name	user	system	elapsed
FinalReport1	4.12	0.04	4.17
FinalReport2	1.70	0.04	1.73
MUGAExampleData-package	3.73	0.03	3.76
Samples1	0	0	0
Samples2	0.01	0.00	0.02
call.rate.batch	0	0	0
geno	1.19	0.03	1.37
model.probs	1.06	0.04	1.11
pheno	0.01	0.00	0.02
x	0.10	0.02	0.11
y	0.12	0.00	0.12

name	user	system	elapsed
FinalReport1	3.80	0.06	3.87
FinalReport2	1.46	0.00	1.46
MUGAExampleData-package	3.25	0.03	3.28
Samples1	0	0	0
Samples2	0	0	0
call.rate.batch	0	0	0
geno	1.04	0.00	1.04
model.probs	0.80	0.11	0.91
pheno	0	0	0
x	0.13	0.00	0.13
y	0.09	0.02	0.10