BioC experimental data: CHECK report for MUGAExampleData on moscato2
This page was generated on 2016-10-08 19:31:38 -0700 (Sat, 08 Oct 2016).
MUGAExampleData 0.106.0 Daniel Gatti
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/MUGAExampleData | Last Changed Rev: 3760 / Revision: 3935 | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
Summary
Package: MUGAExampleData
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Version: 0.106.0
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Command: rm -rf MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && mkdir MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MUGAExampleData.buildbin-libdir MUGAExampleData_0.106.0.tar.gz >MUGAExampleData.Rcheck\00install.out 2>&1 && cp MUGAExampleData.Rcheck\00install.out MUGAExampleData-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MUGAExampleData.buildbin-libdir --install="check:MUGAExampleData-install.out" --force-multiarch --no-vignettes --timings MUGAExampleData_0.106.0.tar.gz
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StartedAt: 2016-10-08 13:04:55 -0700 (Sat, 08 Oct 2016)
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EndedAt: 2016-10-08 13:07:26 -0700 (Sat, 08 Oct 2016)
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EllapsedTime: 151.3 seconds
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RetCode: 0
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Status: OK
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CheckDir: MUGAExampleData.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && mkdir MUGAExampleData.buildbin-libdir MUGAExampleData.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MUGAExampleData.buildbin-libdir MUGAExampleData_0.106.0.tar.gz >MUGAExampleData.Rcheck\00install.out 2>&1 && cp MUGAExampleData.Rcheck\00install.out MUGAExampleData-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MUGAExampleData.buildbin-libdir --install="check:MUGAExampleData-install.out" --force-multiarch --no-vignettes --timings MUGAExampleData_0.106.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/MUGAExampleData.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MUGAExampleData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MUGAExampleData' version '0.106.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MUGAExampleData' can be installed ... OK
* checking installed package size ... NOTE
installed size is 88.7Mb
sub-directories of 1Mb or more:
data 88.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'E:/biocbld/bbs-3.3-data-experiment/meat/MUGAExampleData.Rcheck/00check.log'
for details.
MUGAExampleData.Rcheck/00install.out:
install for i386
* installing *source* package 'MUGAExampleData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'MUGAExampleData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MUGAExampleData' as MUGAExampleData_0.106.0.zip
* DONE (MUGAExampleData)
MUGAExampleData.Rcheck/examples_i386/MUGAExampleData-Ex.timings:
name | user | system | elapsed
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FinalReport1 | 4.12 | 0.04 | 4.17 |
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FinalReport2 | 1.70 | 0.04 | 1.73 |
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MUGAExampleData-package | 3.73 | 0.03 | 3.76 |
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Samples1 | 0 | 0 | 0 |
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Samples2 | 0.01 | 0.00 | 0.02 |
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call.rate.batch | 0 | 0 | 0 |
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geno | 1.19 | 0.03 | 1.37 |
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model.probs | 1.06 | 0.04 | 1.11 |
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pheno | 0.01 | 0.00 | 0.02 |
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x | 0.10 | 0.02 | 0.11 |
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y | 0.12 | 0.00 | 0.12 |
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MUGAExampleData.Rcheck/examples_x64/MUGAExampleData-Ex.timings:
name | user | system | elapsed
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FinalReport1 | 3.80 | 0.06 | 3.87 |
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FinalReport2 | 1.46 | 0.00 | 1.46 |
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MUGAExampleData-package | 3.25 | 0.03 | 3.28 |
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Samples1 | 0 | 0 | 0 |
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Samples2 | 0 | 0 | 0 |
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call.rate.batch | 0 | 0 | 0 |
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geno | 1.04 | 0.00 | 1.04 |
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model.probs | 0.80 | 0.11 | 0.91 |
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pheno | 0 | 0 | 0 |
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x | 0.13 | 0.00 | 0.13 |
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y | 0.09 | 0.02 | 0.10 |
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