BioC experimental data: CHECK report for KEGGdzPathwaysGEO on linux2.bioconductor.org

Package: KEGGdzPathwaysGEO

Version: 1.9.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.9.0.tar.gz

StartedAt: 2015-10-24 12:23:15 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:28:24 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 309.4 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.9.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [6s/6s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.177	0.000	0.177
GSE14762	0.224	0.004	0.228
GSE15471	0.399	0.012	0.412
GSE16515	0.172	0.016	0.188
GSE18842	0.397	0.012	0.409
GSE19188	0.770	0.028	0.798
GSE19728	0.169	0.004	0.176
GSE20153	0.161	0.000	0.160
GSE20291	0.083	0.008	0.091
GSE21354	0.172	0.000	0.173
GSE3467	0.208	0.004	0.213
GSE3585	0.062	0.000	0.063
GSE3678	0.150	0.004	0.154
GSE4107	0.186	0.004	0.190
GSE5281_EC	0.175	0.008	0.183
GSE5281_HIP	0.163	0.008	0.171
GSE5281_VCX	0.195	0.012	0.207
GSE6956AA	0.066	0.000	0.066
GSE6956C	0.07	0.00	0.07
GSE781	0.071	0.000	0.071
GSE8671	0.362	0.000	0.362
GSE8762	0.177	0.000	0.177
GSE9348	0.446	0.012	0.458
GSE9476	0.159	0.000	0.159
KEGGdzPathwaysGEO-package	0.434	0.008	0.442