BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on linux2.bioconductor.org

Package: KEGGandMetacoreDzPathwaysGEO

Version: 0.105.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.105.0.tar.gz

StartedAt: 2015-10-24 12:23:07 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:23:50 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 43.2 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.105.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.105.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

name	user	system	elapsed
GSE1145	0.328	0.020	0.348
GSE11906	3.065	0.015	3.081
GSE14924_CD4	0.273	0.012	0.286
GSE14924_CD8	0.225	0.012	0.238
GSE16759	0.303	0.004	0.306
GSE19420	0.190	0.012	0.202
GSE20164	0.07	0.00	0.07
GSE22780	0.195	0.000	0.196
GSE23878	0.697	0.000	0.699
GSE24739_G0	0.530	0.004	0.534
GSE24739_G1	0.620	0.004	0.625
GSE30153	0.682	0.008	0.691
GSE32676	0.678	0.000	0.678
GSE38666_epithelia	0.303	0.008	0.311
GSE38666_stroma	0.192	0.008	0.201
GSE4183	0.227	0.008	0.234
GSE42057	0.905	0.004	0.910
GSE7305	0.649	0.008	0.658
KEGGandMetacoreDzPathwaysGEO-package	0.668	0.012	0.681