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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ITALICSData_2.9.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/ITALICSData.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ITALICSData/DESCRIPTION’ ... OK
* this is package ‘ITALICSData’ version ‘2.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ITALICSData’ can be installed ... [1s/30s] OK
* checking installed package size ... NOTE
installed size is 182.4Mb
sub-directories of 1Mb or more:
extdata 181.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: Hind.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Hind.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Hind.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Hind.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Nsp.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Nsp.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Nsp.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Nsp.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Sty.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Sty.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Sty.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Sty.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Xba.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Xba.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Xba.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Xba.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: quartetInfo.Rd:12-14: Dropping empty section \format
prepare_Rd: quartetInfo.Rd:15-17: Dropping empty section \source
prepare_Rd: quartetInfo.Rd:18-19: Dropping empty section \references
prepare_Rd: snpInfo.Rd:12-14: Dropping empty section \format
prepare_Rd: snpInfo.Rd:16-18: Dropping empty section \source
prepare_Rd: snpInfo.Rd:19-20: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
quartetInfo.RData 727Kb 514Kb xz
snpInfo.RData 68Kb 54Kb xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
‘/Users/biocbuild/bbs-3.3-data-experiment/meat/ITALICSData.Rcheck/00check.log’
for details.