BioC experimental data: CHECK report for GSBenchMark on windows2.bioconductor.org

Package: GSBenchMark

Version: 0.105.0

Command: rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.105.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.105.0.tar.gz

StartedAt: 2015-10-24 12:20:06 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:20:40 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 34.6 seconds

RetCode: 0

Status:  OK

CheckDir: GSBenchMark.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.105.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.105.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSBenchMark/DESCRIPTION' ... OK
* this is package 'GSBenchMark' version '0.105.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSBenchMark' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GSBenchMark' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSBenchMark' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSBenchMark' as GSBenchMark_0.105.0.zip
* DONE (GSBenchMark)

name	user	system	elapsed
GSBenchMarkDatasets	0.33	0.00	0.33
bipolar_GDS2190	0.27	0.00	0.26
breast_GDS807	0.26	0.01	0.28
diracpathways	0.00	0.03	0.03
exprsdata	0.37	0.02	0.39
leukemia_GSEA	0.25	0.00	0.25
logexprsdata	0.4	0.0	0.4
marfan_GDS2960	0.13	0.01	0.14
melanoma_GDS2735	0.33	0.03	0.36
parkinsons_GDS2519	0.61	0.05	0.66
phenotypes	0.5	0.0	0.5
prostate_GDS2545_m_nf	0.25	0.00	0.25
prostate_GDS2545_m_p	0.47	0.02	0.48
prostate_GDS2545_p_nf	0.37	0.03	0.41
sarcoma_data	0.67	0.03	0.70
squamous_GDS2520	0.21	0.05	0.25

name	user	system	elapsed
GSBenchMarkDatasets	0.31	0.02	0.33
bipolar_GDS2190	0.20	0.03	0.23
breast_GDS807	0.24	0.00	0.23
diracpathways	0.00	0.01	0.02
exprsdata	0.31	0.04	0.34
leukemia_GSEA	0.23	0.00	0.24
logexprsdata	0.32	0.03	0.34
marfan_GDS2960	0.07	0.04	0.13
melanoma_GDS2735	0.33	0.00	0.33
parkinsons_GDS2519	0.47	0.05	0.51
phenotypes	0.36	0.03	0.39
prostate_GDS2545_m_nf	0.27	0.00	0.27
prostate_GDS2545_m_p	0.35	0.02	0.37
prostate_GDS2545_p_nf	0.30	0.03	0.33
sarcoma_data	0.58	0.03	0.61
squamous_GDS2520	0.23	0.00	0.23