BioC experimental data: CHECK report for GGdata on moscato2

Package: GGdata

Version: 1.10.0

Command: rm -rf GGdata.buildbin-libdir GGdata.Rcheck && mkdir GGdata.buildbin-libdir GGdata.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GGdata.buildbin-libdir GGdata_1.10.0.tar.gz >GGdata.Rcheck\00install.out 2>&1 && cp GGdata.Rcheck\00install.out GGdata-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GGdata.buildbin-libdir --install="check:GGdata-install.out" --force-multiarch --no-vignettes --timings GGdata_1.10.0.tar.gz

StartedAt: 2016-10-08 12:16:51 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 12:24:28 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 457.0 seconds

RetCode: 0

Status:  OK

CheckDir: GGdata.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf GGdata.buildbin-libdir GGdata.Rcheck && mkdir GGdata.buildbin-libdir GGdata.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GGdata.buildbin-libdir GGdata_1.10.0.tar.gz >GGdata.Rcheck\00install.out 2>&1 && cp GGdata.Rcheck\00install.out GGdata-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GGdata.buildbin-libdir --install="check:GGdata-install.out" --force-multiarch --no-vignettes --timings GGdata_1.10.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GGdata.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GGdata/DESCRIPTION' ... OK
* this is package 'GGdata' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GGdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 71.9Mb
  sub-directories of 1Mb or more:
    data   21.1Mb
    parts  50.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'AnnotationDbi' 'GGBase' 'illuminaHumanv1.db' 'methods' 'snpStats'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'GGdata/R/zzz.R':
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""), "\n")
    packageStartupMessage("available chromosomes are named ", paste(selectSome(cn),     collapse = ", "), "\n")

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
hmceuB36-pkg 11.09   0.53  178.51
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
hmceuB36-pkg 12.39   0.48   30.62
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/GGdata.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GGdata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'GGdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GGdata' as GGdata_1.10.0.zip
* DONE (GGdata)

name	user	system	elapsed
hmceuB36-pkg	11.09	0.53	178.51

name	user	system	elapsed
hmceuB36-pkg	12.39	0.48	30.62