BioC experimental data: CHECK report for DLBCL on windows2.bioconductor.org

Package: DLBCL

Version: 1.11.0

Command: rm -rf DLBCL.buildbin-libdir DLBCL.Rcheck && mkdir DLBCL.buildbin-libdir DLBCL.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DLBCL.buildbin-libdir DLBCL_1.11.0.tar.gz >DLBCL.Rcheck\00install.out 2>&1 && cp DLBCL.Rcheck\00install.out DLBCL-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=DLBCL.buildbin-libdir --install="check:DLBCL-install.out" --force-multiarch --no-vignettes --timings DLBCL_1.11.0.tar.gz

StartedAt: 2015-10-24 12:05:40 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:06:14 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 33.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: DLBCL.Rcheck

Warnings: 1

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### Running command:
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###   rm -rf DLBCL.buildbin-libdir DLBCL.Rcheck && mkdir DLBCL.buildbin-libdir DLBCL.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DLBCL.buildbin-libdir DLBCL_1.11.0.tar.gz >DLBCL.Rcheck\00install.out 2>&1 && cp DLBCL.Rcheck\00install.out DLBCL-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=DLBCL.buildbin-libdir --install="check:DLBCL-install.out" --force-multiarch --no-vignettes --timings DLBCL_1.11.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/DLBCL.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DLBCL/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DLBCL' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DLBCL' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   5.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  exprLym.rda        4.3Mb    2.6Mb       xz
  interactome.rda    990Kb    520Kb       xz
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/DLBCL.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'DLBCL' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'DLBCL' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DLBCL' as DLBCL_1.11.0.zip
* DONE (DLBCL)

name	user	system	elapsed
dataLym	0.04	0.00	0.03
exprLym	0.09	0.00	0.09
interactome	0.69	0.00	0.69

name	user	system	elapsed
dataLym	0.01	0.02	0.03
exprLym	0.10	0.01	0.11
interactome	0.60	0.03	0.64