BioC experimental data: CHECK report for ChAMPdata on zin2

Package: ChAMPdata

Version: 1.10.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_1.10.0.tar.gz

StartedAt: 2016-10-08 09:12:25 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 09:15:05 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 160.5 seconds

RetCode: 0

Status:  OK

CheckDir: ChAMPdata.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_1.10.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 394.0Mb
  sub-directories of 1Mb or more:
    data     270.3Mb
    extdata  123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
ChAMPdata-package 32.811  0.515  33.361
testDataSet       10.414  0.040  10.460
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.

* installing *source* package ‘ChAMPdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ChAMPdata)

name	user	system	elapsed
CellTypeMeans27K	0.120	0.000	0.119
CellTypeMeans450K	0.002	0.000	0.002
ChAMPdata-package	32.811	0.515	33.361
EPICSimData	3.308	0.072	3.385
bloodCtl	0.002	0.000	0.002
illumina450Gr	1.975	0.008	1.983
illuminaEPICGr	3.255	0.020	3.277
multi.hit	1.273	0.008	1.281
probe.features	0.938	0.008	0.947
probe.features.epic	0.663	0.008	0.671
probeInfoALL.epic.lv	0.673	0.004	0.678
probeInfoALL.lv	0.509	0.000	0.509
snp.hit	0.867	0.004	0.871
testDataSet	10.414	0.040	10.460