BioC experimental data: CHECK report for ARRmData on zin2

Package: ARRmData

Version: 1.8.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ARRmData_1.8.0.tar.gz

StartedAt: 2016-10-08 09:07:46 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 09:08:11 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 25.3 seconds

RetCode: 0

Status:  OK

CheckDir: ARRmData.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ARRmData_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ARRmData.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ARRmData/DESCRIPTION’ ... OK
* this is package ‘ARRmData’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ARRmData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 56.6Mb
  sub-directories of 1Mb or more:
    data  56.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ARRmNormalization’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
betaMatrix 5.377   0.06   5.439
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ARRmData.Rcheck/00check.log’
for details.

* installing *source* package ‘ARRmData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ARRmData)

name	user	system	elapsed
betaMatrix	5.377	0.060	5.439
greenControlMatrix	0.006	0.000	0.006
redControlMatrix	0.006	0.000	0.006
sampleNames	0.002	0.000	0.002