sevenbridges 1.1.17
Tengfei Yin
| Snapshot Date: 2016-04-24 17:20:18 -0700 (Sun, 24 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sevenbridges | | Last Changed Rev: 116198 / Revision: 116753 | | Last Changed Date: 2016-04-12 15:21:07 -0700 (Tue, 12 Apr 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### rm -rf sevenbridges.buildbin-libdir sevenbridges.Rcheck && mkdir sevenbridges.buildbin-libdir sevenbridges.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sevenbridges.buildbin-libdir sevenbridges_1.1.17.tar.gz >sevenbridges.Rcheck\00install.out 2>&1 && cp sevenbridges.Rcheck\00install.out sevenbridges-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=sevenbridges.buildbin-libdir --install="check:sevenbridges-install.out" --force-multiarch --no-vignettes --timings sevenbridges_1.1.17.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/sevenbridges.Rcheck'
* using R version 3.3.0 beta (2016-04-10 r70462)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sevenbridges/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sevenbridges' version '1.1.17'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sevenbridges' can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
R 1.0Mb
doc 4.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Missing or unexported object: 'liftr::parse_rmd'
Unexported objects imported by ':::' calls:
'S4Vectors:::new_SimpleList_from_list' 'httr:::body_config'
'httr:::compact' 'httr:::is.url' 'httr:::named'
'httr:::request_build' 'httr:::request_perform'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ToolUI: no visible global function definition for 'miniPage'
ToolUI: no visible global function definition for 'gadgetTitleBar'
ToolUI: no visible global function definition for 'miniCotentPanel'
ToolUI: no visible global function definition for 'stableColumnLayout'
ToolUI: no visible global function definition for 'textInput'
ToolUI: no visible global function definition for 'uiOutput'
handle_url2: no visible global function definition for 'is.url'
Undefined global functions or variables:
gadgetTitleBar is.url miniCotentPanel miniPage stableColumnLayout
textInput uiOutput
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R' [3s]
[3s] OK
** running tests for arch 'x64' ...
Running 'testthat.R' [3s]
[4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'E:/biocbld/bbs-3.3-bioc/meat/sevenbridges.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'sevenbridges' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'sevenbridges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sevenbridges' as sevenbridges_1.1.17.zip
* DONE (sevenbridges)