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This page was generated on 2026-05-07 15:41 -0400 (Thu, 07 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4879
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 26/434HostnameOS / ArchINSTALLBUILDCHECK
BioPlex 1.19.0  (landing page)
Ludwig Geistlinger
Snapshot Date: 2026-05-07 08:30 -0400 (Thu, 07 May 2026)
git_url: https://git.bioconductor.org/packages/BioPlex
git_branch: devel
git_last_commit: 74eaec1
git_last_commit_date: 2026-04-28 08:36:15 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped

BUILD results for BioPlex on nebbiolo2

To the developers/maintainers of the BioPlex package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BioPlex
Version: 1.19.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex
StartedAt: 2026-05-07 11:08:22 -0400 (Thu, 07 May 2026)
EndedAt: 2026-05-07 11:09:02 -0400 (Thu, 07 May 2026)
EllapsedTime: 39.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex
###
##############################################################################
##############################################################################


* checking for file ‘BioPlex/DESCRIPTION’ ... OK
* preparing ‘BioPlex’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BasicChecks.Rmd’ using rmarkdown

Quitting from BasicChecks.Rmd:50-55 [orgdb]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Hub_get1()`:
! no records found for the given index
---
Backtrace:
    ▆
 1. ├─orgdb[[1]]
 2. └─orgdb[[1]]
 3.   └─AnnotationHub (local) .local(x, i, j = j, ...)
 4.     └─AnnotationHub:::.Hub_get1(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BasicChecks.Rmd' failed with diagnostics:
no records found for the given index
--- failed re-building ‘BasicChecks.Rmd’

--- re-building ‘BioPlex.Rmd’ using rmarkdown

Quitting from BioPlex.Rmd:101-106 [orgdb]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Hub_get1()`:
! no records found for the given index
---
Backtrace:
    ▆
 1. ├─orgdb[[1]]
 2. └─orgdb[[1]]
 3.   └─AnnotationHub (local) .local(x, i, j = j, ...)
 4.     └─AnnotationHub:::.Hub_get1(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BioPlex.Rmd' failed with diagnostics:
no records found for the given index
--- failed re-building ‘BioPlex.Rmd’

SUMMARY: processing the following files failed:
  ‘BasicChecks.Rmd’ ‘BioPlex.Rmd’

Error: Vignette re-building failed.
Execution halted