Jack R. Leary
| Snapshot Date: 2026-03-08 13:40 -0400 (Sun, 08 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/scLANE |
| git_branch: devel |
| git_last_commit: 538e73c |
| git_last_commit_date: 2026-03-03 15:43:14 -0400 (Tue, 03 Mar 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:34 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1932/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scLANE 1.1.3 (landing page) Jack R. Leary
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for scLANE in R Universe. | ||||||||||||||
|
To the developers/maintainers of the scLANE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scLANE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scLANE |
| Version: 1.1.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scLANE |
| StartedAt: 2026-03-08 16:14:35 -0400 (Sun, 08 Mar 2026) |
| EndedAt: 2026-03-08 16:15:03 -0400 (Sun, 08 Mar 2026) |
| EllapsedTime: 27.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scLANE
###
##############################################################################
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* checking for file ‘scLANE/DESCRIPTION’ ... OK
* preparing ‘scLANE’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘scLANE.Rmd’ using rmarkdown
2026-03-08 16:14:56.359 R[14371:118145214] XType: Using static font registry.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpTaHqpy/Rbuild33fa76f298a1/scLANE/vignettes/scLANE_files/figure-html/unnamed-chunk-3-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpTaHqpy/Rbuild33fa76f298a1/scLANE/vignettes/scLANE_files/figure-html/unnamed-chunk-4-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpTaHqpy/Rbuild33fa76f298a1/scLANE/vignettes/scLANE_files/figure-html/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpTaHqpy/Rbuild33fa76f298a1/scLANE/vignettes/scLANE_files/figure-html/unnamed-chunk-10-1.png" but not available.
Failed with error: 'there is no package called 'magick''
Quitting from scLANE.Rmd:237-258 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'magick' package should be installed.
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─methods::show(x)
6. └─methods::show(x)
7. ├─ComplexHeatmap::draw(object)
8. └─ComplexHeatmap::draw(object)
9. └─ComplexHeatmap (local) .local(object, ...)
10. ├─ComplexHeatmap::draw(ht_list, ...)
11. └─ComplexHeatmap::draw(ht_list, ...)
12. └─ComplexHeatmap (local) .local(object, ...)
13. ├─base::eval(code)
14. │ └─base::eval(code)
15. └─ht_graphic_fun_list[[j]](object)
16. ├─ComplexHeatmap::draw_heatmap_list(object)
17. └─ComplexHeatmap::draw_heatmap_list(object)
18. └─ComplexHeatmap (local) .local(object, ...)
19. ├─ComplexHeatmap::draw(ht, internal = TRUE)
20. └─ComplexHeatmap::draw(ht, internal = TRUE)
21. └─ComplexHeatmap (local) .local(object, ...)
22. └─ht_graphic_fun_list[[j]](object)
23. ├─ComplexHeatmap::draw_heatmap_body(...)
24. └─ComplexHeatmap::draw_heatmap_body(...)
25. └─ComplexHeatmap (local) .local(object, ...)
26. └─ComplexHeatmap:::stop_wrap("'magick' package should be installed.")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'scLANE.Rmd' failed with diagnostics:
'magick' package should be installed.
--- failed re-building ‘scLANE.Rmd’
SUMMARY: processing the following file failed:
‘scLANE.Rmd’
Error: Vignette re-building failed.
Execution halted