| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-02-04 11:32 -0500 (Wed, 04 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4852 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1912/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scFeatureFilter 1.31.0 (landing page) Guillaume Devailly
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for scFeatureFilter in R Universe. | ||||||||||||||
|
To the developers/maintainers of the scFeatureFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scFeatureFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scFeatureFilter |
| Version: 1.31.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scFeatureFilter |
| StartedAt: 2026-02-03 19:54:53 -0500 (Tue, 03 Feb 2026) |
| EndedAt: 2026-02-03 19:55:26 -0500 (Tue, 03 Feb 2026) |
| EllapsedTime: 33.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scFeatureFilter
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* checking for file ‘scFeatureFilter/DESCRIPTION’ ... OK
* preparing ‘scFeatureFilter’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
Quitting from Introduction.Rmd:183-188 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `select_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `select()` instead.
---
Backtrace:
▆
1. ├─scFeatureFilter::plot_correlations_distributions(...)
2. │ ├─... %>% dplyr::summarise(metric = median(abs(metric)))
3. │ └─dplyr::select_(metrics, "bin", "window", vlines)
4. │ └─dplyr:::lazy_defunct("select", hint = FALSE)
5. │ └─lifecycle::deprecate_stop(...)
6. │ └─lifecycle:::deprecate_stop0(msg)
7. ├─dplyr::summarise(., metric = median(abs(metric)))
8. ├─dplyr::group_by(., bin, window)
9. ├─dplyr::mutate(., window = sub("_[0-9]+$", "", window))
10. └─dplyr::rename(., metric = !!vlines)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
`select_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `select()` instead.
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted