| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-05-22 11:33 -0400 (Fri, 22 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4995 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1062/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| igblastr 1.2.3 (landing page) Hervé Pagès
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for igblastr in R Universe. | ||||||||||||||
|
To the developers/maintainers of the igblastr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/igblastr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: igblastr |
| Version: 1.2.3 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr |
| StartedAt: 2026-05-21 18:21:48 -0400 (Thu, 21 May 2026) |
| EndedAt: 2026-05-21 18:22:18 -0400 (Thu, 21 May 2026) |
| EllapsedTime: 30.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr
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* checking for file ‘igblastr/DESCRIPTION’ ... OK
* preparing ‘igblastr’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘igblastr_overview.Rmd’ using rmarkdown
Quitting from igblastr_overview.Rmd:285-287 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.stop_on_invalid_c_region_db_name()`:
! "_IMGT.human.IGH+IGK+IGL.202605" is not the name of a cached C-region db.
Use list_c_region_dbs() to list the C-region dbs currently installed in
igblastr's cache (see '?list_c_region_dbs').
---
Backtrace:
▆
1. └─igblastr::use_c_region_db("_IMGT.human.IGH+IGK+IGL.202605")
2. └─igblastr:::.select_c_region_db(db_name, verbose = verbose)
3. └─igblastr:::check_c_region_db_name(db_name)
4. └─igblastr:::.stop_on_invalid_c_region_db_name(db_name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'igblastr_overview.Rmd' failed with diagnostics:
"_IMGT.human.IGH+IGK+IGL.202605" is not the name of a cached C-region db.
Use list_c_region_dbs() to list the C-region dbs currently installed in
igblastr's cache (see '?list_c_region_dbs').
--- failed re-building ‘igblastr_overview.Rmd’
SUMMARY: processing the following file failed:
‘igblastr_overview.Rmd’
Error: Vignette re-building failed.
Execution halted