| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-14 11:32 -0500 (Sat, 14 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4864 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1036/2352 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| idpr 1.21.0 (landing page) William M. McFadden
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for idpr in R Universe. | ||||||||||||||
|
To the developers/maintainers of the idpr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/idpr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: idpr |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data idpr |
| StartedAt: 2026-02-13 18:17:08 -0500 (Fri, 13 Feb 2026) |
| EndedAt: 2026-02-13 18:19:15 -0500 (Fri, 13 Feb 2026) |
| EllapsedTime: 126.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data idpr
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* checking for file ‘idpr/DESCRIPTION’ ... OK
* preparing ‘idpr’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘chargeHydropathy-vignette.Rmd’ using rmarkdown
--- finished re-building ‘chargeHydropathy-vignette.Rmd’
--- re-building ‘disorderedMatrices-vignette.Rmd’ using rmarkdown
--- finished re-building ‘disorderedMatrices-vignette.Rmd’
--- re-building ‘idpr-vignette.Rmd’ using rmarkdown
--- finished re-building ‘idpr-vignette.Rmd’
--- re-building ‘iupred-vignette.Rmd’ using rmarkdown
Quitting from iupred-vignette.Rmd:207-211 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://iupred2a.elte.hu/iupred2a/anchor/P04637.json'
---
Backtrace:
▆
1. └─idpr::iupredAnchor(p53_ID, proteinName = "HUMAN P53")
2. └─jsonlite::fromJSON(iupredURL)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_con(txt, bigint_as_char)
6. ├─base::open(con, "rb")
7. └─base::open.connection(con, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'iupred-vignette.Rmd' failed with diagnostics:
cannot open the connection to 'https://iupred2a.elte.hu/iupred2a/anchor/P04637.json'
--- failed re-building ‘iupred-vignette.Rmd’
--- re-building ‘sequenceMAP-vignette.Rmd’ using rmarkdown
--- finished re-building ‘sequenceMAP-vignette.Rmd’
--- re-building ‘structuralTendency-vignette.Rmd’ using rmarkdown
--- finished re-building ‘structuralTendency-vignette.Rmd’
SUMMARY: processing the following file failed:
‘iupred-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted