Travers Ching
| Snapshot Date: 2026-03-24 13:40 -0400 (Tue, 24 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/fraq |
| git_branch: devel |
| git_last_commit: d2f1ab3 |
| git_last_commit_date: 2026-02-12 21:25:53 -0400 (Thu, 12 Feb 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-25 11:35 -0400 (Wed, 25 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4876 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4573 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 785/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fraq 0.99.2 (landing page) Travers Ching
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | ERROR | |||||||||
| See other builds for fraq in R Universe. | ||||||||||||||
|
To the developers/maintainers of the fraq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fraq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: fraq |
| Version: 0.99.2 |
| Command: rm -rf fraq.buildbin-libdir && mkdir fraq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fraq_0.99.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R fraq.buildbin-libdir |
| StartedAt: 2026-03-24 23:14:36 -0400 (Tue, 24 Mar 2026) |
| EndedAt: 2026-03-24 23:15:10 -0400 (Tue, 24 Mar 2026) |
| EllapsedTime: 34.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf fraq.buildbin-libdir && mkdir fraq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fraq_0.99.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R fraq.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fraq.buildbin-libdir fraq_0.99.2.tar.gz' >>>>>>> * installing *source* package ‘fraq’ ... ** this is package ‘fraq’ version ‘0.99.2’ ** using staged installation checking for pkg-config... /opt/homebrew/bin/pkg-config checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++ -arch arm64 -std=gnu++20 accepts -g... yes checking for clang++ -arch arm64 -std=gnu++20 option to enable C++11 features... -std=gnu++11 C++ compiler: clang++ -arch arm64 -std=gnu++20 zstd 1.5.7 library detected -- skipping zstd compilation Does not require -latomic flag configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’ using SDK: ‘MacOSX26.2.sdk’ clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -I/opt/homebrew/opt/zstd/include -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppParallel/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/edlibR/include' -I/opt/R/arm64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -I/opt/homebrew/opt/zstd/include -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppParallel/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/edlibR/include' -I/opt/R/arm64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c fraq_functions.cpp -o fraq_functions.o clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o fraq.so RcppExports.o fraq_functions.o -L. -L/opt/homebrew/opt/zstd/lib -lzstd -L/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R installing to /Users/biocbuild/bbs-3.23-bioc/meat/fraq.buildbin-libdir/00LOCK-fraq/00new/fraq/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fraq) >>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR fraq.buildbin-libdir/fraq/libs/fraq.so >>>>>>> >>>>>>> Paths before fix: fraq.buildbin-libdir/fraq/libs/fraq.so: fraq.so (compatibility version 0.0.0, current version 0.0.0) /opt/homebrew/opt/zstd/lib/libzstd.1.dylib (compatibility version 1.0.0, current version 1.5.7) @rpath/libtbb.dylib (compatibility version 0.0.0, current version 0.0.0) @rpath/libtbbmalloc.dylib (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 2000.67.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0) >>>>>>> Fix with install_name_tool: ERROR: R installation problem: File /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/lib/libR.dylib not found!